ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
ASTRAL-1.75B d3kwoa_ a.25.1.0 144 see topology u'DNA protection during starvation protein' Campylobacter jejuni
ASTRAL-1.75B d3kwua1 b.7.1.0 133 see topology u'Protein unc-13 homolog A' Rattus norvegicus
ASTRAL-1.75B d3kxsa_ a.62.1.1 140 see topology u'Capsid protein' Hepatitis B virus
ASTRAL-1.75B d3kzga_ c.94.1.0 220 see topology u'Arginine 3rd transport system periplasmic binding protein' Legionella pneumophila
ASTRAL-1.75B d3l0fa_ a.1.1.3 162 see topology u'C-phycocyanin alpha chain' Thermosynechococcus elongatus
ASTRAL-1.75B d3l18a_ c.23.16.2 168 see topology u'Intracellular protease I' Thermococcus onnurineus
ASTRAL-1.75B d3l21a_ c.1.10.1 295 see topology u'4-hydroxy-tetrahydrodipicolinate synthase' Mycobacterium tuberculosis
ASTRAL-1.75B d3l2ca_ a.4.5.14 85 see topology u'Forkhead box protein O4' Homo sapiens
ASTRAL-1.75B d3l44a_ c.67.1.0 413 see topology u'Glutamate-1-semialdehyde 2,1-aminomutase 1' Bacillus anthracis
ASTRAL-1.75B d3l4da_ a.104.1.0 448 see topology u'Sterol-14-alpha-demethylase' Leishmania infantum
ASTRAL-1.75B d3l51b_ d.215.1.0 163 see topology u'Structural maintenance of chromosomes protein 4' Mus musculus
ASTRAL-1.75B d3l5la_ c.1.4.0 359 see topology u'Xenobiotic reductase' Pseudomonas putida
ASTRAL-1.75B d3l5oa_ c.67.3.1 241 see topology u'Uncharacterized protein' Desulfitobacterium hafniense
ASTRAL-1.75B d3l5xa_ a.26.1.2 101 see topology u'Interleukin-13' Homo sapiens
ASTRAL-1.75B d3l60a_ c.43.1.0 229 see topology u'Dihydrolipoyllysine-residue acyltransferase component of branched-chain alpha-ketoacid dehydrogenase complex' Mycobacterium tuberculosis
ASTRAL-1.75B d3l6ba_ c.79.1.0 322 see topology u'Serine racemase' Homo sapiens
ASTRAL-1.75B d3l6ea_ c.2.1.0 204 see topology u'Oxidoreductase, short-chain dehydrogenase/reductase family' Aeromonas hydrophila
ASTRAL-1.75B d3l6ta_ d.89.1.0 226 see topology u'TraI' Escherichia coli
ASTRAL-1.75B d3l77a_ c.2.1.0 235 see topology u'Short-chain alcohol dehydrogenase' Thermococcus sibiricus
ASTRAL-1.75B d3l7ha_ d.110.7.1 86 see topology u'Roadblock' Drosophila melanogaster
Table Description [Click here to expand]

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins