ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
ASTRAL-1.75B d3gv3a_ d.9.1.1 63 see topology u'Stromal cell-derived factor 1' Homo sapiens
ASTRAL-1.75B d3gvoa_ a.118.1.8 342 see topology u'Pumilio homolog 2' Mus musculus
ASTRAL-1.75B d3gwya_ d.113.1.0 121 see topology u'Putative CTP pyrophosphohydrolase' Bacteroides fragilis
ASTRAL-1.75B d3gxba_ c.62.1.0 178 see topology u'von Willebrand factor' Homo sapiens
ASTRAL-1.75B d3gzyb_ d.17.4.4 186 see topology u'Biphenyl dioxygenase subunit beta' Comamonas testosteroni
ASTRAL-1.75B d3h0na_ d.380.1.1 182 see topology u'Uncharacterized protein' Jannaschia sp. CCS1
ASTRAL-1.75B d3h0oa_ b.29.1.2 240 see topology u'Beta-glucanase' Fibrobacter succinogenes
ASTRAL-1.75B d3h2ve_ d.58.7.1 74 see topology u'Ribonucleoprotein PTB-binding 1' Homo sapiens
ASTRAL-1.75B d3h31a_ g.35.1.1 74 see topology u'High potential iron-sulfur protein' Rhodothermus marinus
ASTRAL-1.75B d3h4na_ a.138.1.1 67 see topology u'Cytochrome c' Geobacter sulfurreducens
ASTRAL-1.75B d3h4ta_ c.87.1.5 390 see topology u'dTDP-epi-vancosaminyltransferase' Amycolatopsis orientalis
ASTRAL-1.75B d3h63a_ d.159.1.3 315 see topology u'Serine/threonine-protein phosphatase 5' Homo sapiens
ASTRAL-1.75B d3h79a_ c.47.1.0 115 see topology u'Uncharacterized protein' Trypanosoma cruzi
ASTRAL-1.75B d3h7ma_ c.94.1.0 228 see topology u'Periplasmic substrate-binding histidine kinase' Geobacter sulfurreducens
ASTRAL-1.75B d3h7oa_ b.47.1.0 228 see topology u'Group 3 allergen SMIPP-S Yv6023A04' Sarcoptes scabiei
ASTRAL-1.75B d3h8ka_ d.20.1.1 164 see topology u'Ubiquitin-conjugating enzyme E2 G2' Homo sapiens
ASTRAL-1.75B d3h8qa_ c.47.1.0 108 see topology u'Thioredoxin reductase 3' Homo sapiens
ASTRAL-1.75B d3h93a_ c.47.1.0 186 see topology u'Thiol Pseudomonas aeruginosa
ASTRAL-1.75B d3hcga_ b.88.1.3 143 see topology u'Peptide methionine sulfoxide reductase MsrA/MsrB' Neisseria meningitidis
ASTRAL-1.75B d3hcna_ c.92.1.1 359 see topology u'Ferrochelatase, mitochondrial' Homo sapiens
Table Description [Click here to expand]

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins