Protein Detail

Protein Information

Domain Id	d2h30a_
DB_Source-Class	ASTRAL-1.75B, c.47.1.10
Molecule	u'Peptide methionine sulfoxide reductase MsrA/MsrB'
Residues	149
Sequence
SSE Sequence^*(9)	`EHEHEHEEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ca.0.Ca.0.0.Ea.Ca-Ep.0.Ep.0.0.0.Cp-0.0.0.0.0.0-0.0.0.0.0-Ca.Cp.0.0-Ea.0.0-0.Hr-Ca`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d2h30a_

Protein Id: d2h30a_

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d2h30a_

Protein Id: d2h30a_

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EHE	Ca.Ca-Ep	True	2X4K:B, 3EJ9:B, 3EJ9:D, 3EJ9:F, 3MB2:B, 3MB2:D, 3MB2:F, 3MB2:H, 3MB2:J, 3MB2:L, 4X1C:B, 2PJR:B,	d3ej9b_,
3	HEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,
4	EHEE	0.0.Ea-0.0-0	True	3ZIA:I, 3ZIA:S, 5LSL:E, 5LSL:G, 5LSL:H, 2DSR:G,	d2dsrg1,
4	HEEH	0.Ea.Ca-0.Cp-0	True	2YNY:A, 2YNY:C, 3UK3:C, 3UK3:D, 4BMJ:F, 4BMJ:G, 4F52:B, 4ISO:B, 5MQ4:B, 5MQ4:C, 5MQ4:D, 5MQ4:E, 5MQ4:F, 1ZR0:B,	d1vlia1, 1yuiA00,
5	EHEEH	0.0.Ea.Ca-0.0.Cp-0.0-0	False	5MQ4:A,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2H30	A	149	Peptide methionine sulfoxide reductase MsrA/MsrB	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2WZ9	A	120	Glutaredoxin-3	View
2XC2	A	110	Thioredoxin, Trx1	View
2Y71	A	138	3-dehydroquinate dehydratase	View
2Y9M	B	117	Peroxisome assembly protein 22	View
3A10	A	113	Response regulator	View
3APS	A	114	DnaJ homolog subfamily C member 10	View
3APS	B	114	DnaJ homolog subfamily C member 10	View
3C97	A	120	Signal transduction histidine kinase	View
3CU5	A	124	Two component transcriptional regulator, AraC family	View
3D6I	A	109	Monothiol glutaredoxin-3	View
3D6I	B	106	Monothiol glutaredoxin-3	View
3F3Q	A	109	Thioredoxin-1	View
3G13	B	132	Putative recombinase Tn916-like, CTn7-Orf1	View
3H5I	A	125	Response regulator/sensory box protein/GGDEF domain protein	View
3H79	A	115	Uncharacterized protein	View
3HCZ	A	146	Possible thiol-disulfide isomerase	View
3HHV	A	103	Thioredoxin (TrxA-2)	View
3IV4	A	110	Uncharacterized protein	View
3KIP	A	143	Catabolic 3-dehydroquinase	View
3KIP	U	143	Catabolic 3-dehydroquinase	View
3KIP	V	143	Catabolic 3-dehydroquinase	View
3N53	A	116	Response receiver sensor diguanylate cyclase, GAF domain-containing	View
3N53	B	92	Response receiver sensor diguanylate cyclase, GAF domain-containing	View
3NHM	A	112	Response regulator	View
3NHM	B	112	Response regulator	View
3Q15	D	100	Sporulation initiation phosphotransferase F	View
3QFA	D	105	Thioredoxin	View
3TCO	A	106	Thioredoxin (TrxA-1)	View
3TCO	B	106	Thioredoxin (TrxA-1)	View
3TCO	C	106	Thioredoxin (TrxA-1)	View
3U80	A	127	3-dehydroquinate dehydratase	View
3U80	B	123	3-dehydroquinate dehydratase	View
3UVT	A	106	Thioredoxin domain-containing protein 5	View
3UVT	B	107	Thioredoxin domain-containing protein 5	View
3UVT	C	110	Thioredoxin domain-containing protein 5	View
3UVT	D	107	Thioredoxin domain-containing protein 5	View
3VFI	A	104	Putative thioredoxin	View
3WGX	A	109	Thioredoxin domain-containing protein 5	View
3WGX	B	112	Thioredoxin domain-containing protein 5	View
4AJ8	A	105	Thioredoxin	View
4CW9	A	102	Thioredoxin	View
4CW9	B	104	Thioredoxin	View
4DSS	B	104	Thioredoxin-2	View
4EF0	A	115	Protein disulfide-isomerase A6	View
4EF0	B	115	Protein disulfide-isomerase A6	View
4FO5	A	134	Uncharacterized protein	View
4GWR	A	112	Protein disulfide-isomerase A6	View
4GWR	B	111	Protein disulfide-isomerase A6	View
4HUA	A	107	Thioredoxin-1	View
4I6X	A	117	Protein disulfide-isomerase A5	View
4I8B	A	105	Thioredoxin	View
4I8B	B	105	Thioredoxin	View
4J56	E	105	Thioredoxin	View
4J56	F	105	Thioredoxin	View
4J56	G	105	Thioredoxin	View
4J56	H	105	Thioredoxin	View
4KND	A	104	Thioredoxin	View
4KND	B	103	Thioredoxin	View
4L8L	A	138	3-dehydroquinate dehydratase 1	View
4LL1	B	105	Thioredoxin	View
4LL1	D	105	Thioredoxin	View
4MLD	A	133	Response regulator	View
4MLD	B	132	Response regulator	View
4MLD	C	132	Response regulator	View
4MLD	D	133	Response regulator	View
4NWY	A	128	Protein disulfide-isomerase-like protein of the testis	View
4NWY	B	118	Protein disulfide-isomerase-like protein of the testis	View
4NWY	C	124	Protein disulfide-isomerase-like protein of the testis	View
4NWY	D	123	Protein disulfide-isomerase-like protein of the testis	View
4O1H	C	110	Transcription regulator GlnR	View
4OO4	A	105	Thioredoxin	View
4OO4	B	105	Thioredoxin	View
4POB	A	107	Thioredoxin	View
4POB	B	105	Thioredoxin	View
4WXT	A	108	Thioredoxin	View
4XHM	A	110	Thioredoxin (Trx-3)	View
4XHM	B	109	Thioredoxin (Trx-3)	View
5B6P	A	145	3-dehydroquinate dehydratase	View
5B6P	B	145	3-dehydroquinate dehydratase	View
5B6P	C	145	3-dehydroquinate dehydratase	View
5B6P	D	145	3-dehydroquinate dehydratase	View
5B6P	E	145	3-dehydroquinate dehydratase	View
5B6P	F	145	3-dehydroquinate dehydratase	View
5B6P	G	145	3-dehydroquinate dehydratase	View
5B6P	H	145	3-dehydroquinate dehydratase	View
5B6P	I	145	3-dehydroquinate dehydratase	View
5B6P	J	145	3-dehydroquinate dehydratase	View
5B6P	K	145	3-dehydroquinate dehydratase	View
5B6P	L	145	3-dehydroquinate dehydratase	View
5DBQ	A	106	Thioredoxin	View
5DBQ	B	106	Thioredoxin	View
5WRF	A	145	3-dehydroquinate dehydratase	View
5WRF	B	145	3-dehydroquinate dehydratase	View
5WRF	C	145	3-dehydroquinate dehydratase	View
5WRF	D	145	3-dehydroquinate dehydratase	View
5WRF	E	145	3-dehydroquinate dehydratase	View
5WRF	F	145	3-dehydroquinate dehydratase	View
5WRF	G	145	3-dehydroquinate dehydratase	View
5WRF	I	145	3-dehydroquinate dehydratase	View
5WRF	J	145	3-dehydroquinate dehydratase	View
5WRF	L	145	3-dehydroquinate dehydratase	View
1EP7	A	112	Thioredoxin H-type	View
1FB6	A	104	Thioredoxin M-type, chloroplastic	View
1GH2	A	107	Thioredoxin-like protein 1	View
1NW2	A	105	Thioredoxin	View
1O6D	A	147	Ribosomal RNA large subunit methyltransferase H	View
1O73	A	144	Tryparedoxin	View
1THX	A	108	Thioredoxin-2	View
1W4V	A	110	Thioredoxin, mitochondrial	View
1XWA	A	111	Thioredoxin-2	View
2B4A	A	116	BH3024 protein	View
2E0Q	A	104	Thioredoxin	View
2F51	A	111	Thioredoxin	View
2GM5	A	119	Transposon gamma-delta resolvase	View
2H30	A	149	Peptide methionine sulfoxide reductase MsrA/MsrB	View
2I1U	A	108	Thioredoxin	View
2I4A	A	107		View
2PU9	C	111	Thioredoxin F-type, chloroplastic	View
2UYG	A	142	3-dehydroquinate dehydratase	View
2VIM	A	104	Thioredoxin	View
2VLU	A	111	Uncharacterized protein	View
2VM1	A	110	Thioredoxin	View
2VOC	A	110	Thioredoxin	View
2YNX	A	105		View
5JY5	A	105	Thioredoxin	View

Topology view of query protein [ProLego results]

d2h30a_

Topology Information