Protein Detail

Protein Information

Domain Id	d1j8ba_
DB_Source-Class	ASTRAL-1.75B, d.222.1.1
Molecule	u'Nucleoid-associated protein HI_0442'
Residues	85
Sequence
SSE Sequence^*(4)	`EEEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ea.Ca-Ep.Cp-Ca`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d1j8ba_

Protein Id: d1j8ba_

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d1j8ba_

Protein Id: d1j8ba_

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	Ea.Ea-Ep	True	2XTT:A, 3CFA:L, 3CFA:M, 3CFA:R, 3CFA:S, 3CFH:L, 3CFH:M, 3CFH:R, 3CFH:S, 3LE4:A, 3MLQ:E, 3MLQ:H, 3TVJ:I, 4F98:A, 4GWT:A, 4N7F:A, 4N7F:B, 4REX:A, 5DZD:B, 5E24:B, 5E24:D, 1NH2:C, 1NVP:C, 2A50:A, 2HIP:A,	d1gl0i_, d1goia1, d1kbea_, d1mkna_, d1nh2c_, d1nh2d2, d1o9aa1, d1rl2a2, d2dk1a1, d2hipa_, d2ho2a1, d2jmfa1, 1kbeA00, 1mknA00, 1nh2C00, 1nvpC00, 1o9aA01,
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3I8Z	A	50	E3 SUMO-protein ligase CBX4	View
4XDX	A	70	Interleukin-8	View
4ZLT	L	62	C-C motif chemokine 3	View
1J8B	A	85	Nucleoid-associated protein HI_0442	View
1ZXT	A	69	VMIP-1A	View
d1el0a_	--	74	u'C-C motif chemokine 1'	View
d1gcca_	--	63	u'Ethylene-responsive transcription factor 1A'	View
d1z1ba1	--	49	u'Integrase'	View
d1zxta_	--	69	u'VMIP-1A'	View
d2k7ia1	--	62	u'UPF0339 protein Atu0232'	View
1el0A00	--	74	C-C motif chemokine 1	View
1gccA00	--	63	Ethylene-responsive transcription factor 1A	View
1j8bA00	--	85	Nucleoid-associated protein HI_0442	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YZT	A	66	Uncharacterized protein	View
3BID	A	57	UPF0339 protein NMB1088	View
3BID	B	56	UPF0339 protein NMB1088	View
3BID	C	57	UPF0339 protein NMB1088	View
3BID	D	56	UPF0339 protein NMB1088	View
3BID	E	60	UPF0339 protein NMB1088	View
3BID	F	57	UPF0339 protein NMB1088	View
3BID	G	59	UPF0339 protein NMB1088	View
3BID	H	56	UPF0339 protein NMB1088	View
3F2U	A	51	Chromobox protein homolog 1	View
3FPU	B	66	C-C motif chemokine 3	View
3G7L	A	55	Chromo domain-containing protein 1	View
3GA8	A	67	Antitoxin MqsA	View
3GV3	A	63	Stromal cell-derived factor 1	View
3GV6	A	56	Chromobox protein homolog 6	View
3H91	A	52	Chromobox protein homolog 2	View
3H91	B	52	Chromobox protein homolog 2	View
3HI2	A	70	Antitoxin MqsA	View
3HI2	C	59	Antitoxin MqsA	View
3I8Z	A	50	E3 SUMO-protein ligase CBX4	View
3IGM	A	56	Transcription factor with AP2 domain(S), putative	View
3IGM	B	62	Transcription factor with AP2 domain(S), putative	View
3KZ5	A	47	Protein SopB	View
3KZ5	B	47	Protein SopB	View
3KZ5	E	48	Protein SopB	View
3MTS	A	62	Histone-lysine N-methyltransferase SUV39H1	View
3MTS	B	61	Histone-lysine N-methyltransferase SUV39H1	View
3MTS	C	58	Histone-lysine N-methyltransferase SUV39H1	View
3N52	A	67	C-X-C motif chemokine 2	View
3N52	B	71	C-X-C motif chemokine 2	View
3N52	C	67	C-X-C motif chemokine 2	View
3N52	D	70	C-X-C motif chemokine 2	View
3TN2	A	68	C-C motif chemokine 4	View
3TZD	A	58	Chromobox protein homolog 3	View
3U28	B	48	H/ACA ribonucleoprotein complex subunit 3	View
3VXV	A	65	Methyl-CpG-binding domain protein 4	View
4HCS	A	67	Uncharacterized protein	View
4LG7	A	63	Methyl-CpG-binding domain protein 4	View
4MHE	C	61	C-C motif chemokine 18	View
4MHE	D	60	C-C motif chemokine 18	View
4OIJ	A	71	C-C motif chemokine 1	View
4OIJ	B	71	C-C motif chemokine 1	View
4QUC	A	56	Rhino	View
4WPY	A	88	Uncharacterized protein MT1780	View
4X3K	A	64	Chromobox protein homolog 7	View
4X3K	B	64	Chromobox protein homolog 7	View
4XDX	A	70	Interleukin-8	View
4XT1	B	67	Fractalkine	View
4ZLT	F	62	C-C motif chemokine 3	View
4ZLT	L	62	C-C motif chemokine 3	View
5BT2	A	71	Methyl-CpG-binding protein 2	View
5COY	A	65	C-C motif chemokine 5	View
5COY	B	65	C-C motif chemokine 5	View
5DM6	F	144	50S ribosomal protein L11	View
5EKI	A	72	C-C motif chemokine 21	View
5EKI	B	71	C-C motif chemokine 21	View
5EKI	C	70	C-C motif chemokine 21	View
5EKI	D	71	C-C motif chemokine 21	View
5EKI	E	73	C-C motif chemokine 21	View
5EKI	F	70	C-C motif chemokine 21	View
5EQ0	A	55	Chromobox protein homolog 8	View
5FGO	A	59	Purine-rich binding protein-alpha, isoform E	View
5FGO	C	58	Purine-rich binding protein-alpha, isoform E	View
5FGO	E	61	Purine-rich binding protein-alpha, isoform E	View
5FGO	F	60	Purine-rich binding protein-alpha, isoform E	View
5JA1	B	66	Enterobactin biosynthesis protein YbdZ	View
1DOK	A	72	C-C motif chemokine 2	View
1F2L	A	64	Fractalkine	View
1F9R	A	65	Platelet factor 4	View
1J8B	A	85	Nucleoid-associated protein HI_0442	View
1M8A	A	61	C-C motif chemokine 20	View
1NR4	A	67	C-C motif chemokine 17	View
1O7Z	A	61	C-X-C motif chemokine 10	View
1PFB	A	55	Polycomb group protein Pc	View
1Q3L	A	52	Heterochromatin protein 1	View
1ZXT	A	69	VMIP-1A	View
2AUS	B	53	Ribosome biogenesis protein Nop10	View
2CS7	A	55	Conserved domain protein	View
2FGG	A	83	Uncharacterized protein Rv2632c	View
2FHT	A	68	Viral macrophage inflammatory protein 2	View
2H4O	A	60	SPBc2 prophage-derived uncharacterized protein YonK	View
2NYZ	D	61	Lymphotactin	View
2Q8R	E	66	C-C motif chemokine 14	View
2R3Z	A	68	C-X-C motif chemokine 10	View
2RA4	A	65	C-C motif chemokine 13	View
2WH7	A	152	Hyaluronidase-phage associated	View
3FDT	A	51	Chromobox protein homolog 5	View
1SDF	A	67	Stromal cell-derived factor 1	View

Topology view of query protein [ProLego results]

d1j8ba_

Topology Information