Protein Detail

Protein Information

Domain Id	1uv7A00
DB_Source-Class	CATH 3.5, 3.30.1360.100
Molecule	Type II secretion system protein M
Residues	74
Sequence
SSE Sequence^*(6)	`HEEHEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ea.Ca.Ca.Ea-0.0.0.Cp-Hr.0.Ea-0.0-Ca`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1uv7A00

Protein Id: 1uv7A00

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1uv7A00

Protein Id: 1uv7A00

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HEE	Ca.Ea-0	False	3K65:A,	d1dwka2, d1h5oa_, 1h5oA00,
3	EEH	Ea.Ca-0	True	3OW2:T, 1VQO:U, 2PUY:A,	d1vq8u1, d1we9a_, d1wjva1, d2puya_, 1vq8U00,
3	HEE	Ca.Ea-Cp	True	3E7R:L, 4GV5:A, 4GV5:B, 4GV5:C, 4OWT:C, 4X8W:G, 5TVO:B, 1MHM:B, 2I61:A,	d1ev0a_, d1fjna_, d1icaa_, d1jxca_, d1lira_, d1mm0a_, d1n8ma_, d1olza3, d1pnha_, d1shyb2, d2i61a_, d2pspa2, 1ev0A00, 1jxcA00, 1shyB02, 1wmtA00,
4	EHEE	Ca.Ca.Ea-0.Cp-Ea	True	3KU7:A, 3KU7:B, 3ODV:B, 3ONR:A, 3ONR:B, 3ONR:C, 3ONR:D, 3ONR:E, 3ONR:F, 3ONR:G, 3ONR:H, 3ONR:I, 3ONR:J, 3ONR:K, 3ONR:L,	d1j5ja_, d1ozza_, d1pvza_, d1scoa_, d1sisa_, d1xrsb2, 1i2uA00, 1xrsB01,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
1UV7	A	74	Type II secretion system protein M	View
d1uv7a_	--	74	u'Type II secretion system protein M'	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3C0F	B	80	Uncharacterized protein AF_1514	View
3RUB	S	123	Ribulose bisphosphate carboxylase small chain, chloroplastic	View
3ZXW	B	93	Ribulose bisphosphate carboxylase small subunit	View
3ZXW	D	93	Ribulose bisphosphate carboxylase small subunit	View
3ZXW	F	93	Ribulose bisphosphate carboxylase small subunit	View
3ZXW	H	93	Ribulose bisphosphate carboxylase small subunit	View
4ACV	A	119	Prophage LambdaLm01, antigen B	View
4ACV	B	123	Prophage LambdaLm01, antigen B	View
4HLB	A	94	Uncharacterized protein	View
4MKV	S	123	Ribulose bisphosphate carboxylase small chain 3A, chloroplastic	View
4MKV	T	123	Ribulose bisphosphate carboxylase small chain 3A, chloroplastic	View
4MKV	U	123	Ribulose bisphosphate carboxylase small chain 3A, chloroplastic	View
4MKV	V	123	Ribulose bisphosphate carboxylase small chain 3A, chloroplastic	View
4NDS	A	94	Alpha-galactosyl-binding lectin	View
4NDS	B	94	Alpha-galactosyl-binding lectin	View
5HL8	C	78	Type II secretion system protein L	View
5HL8	D	68	Type II secretion system protein L	View
8RUC	I	123	Ribulose bisphosphate carboxylase small chain	View
8RUC	J	123	Ribulose bisphosphate carboxylase small chain	View
8RUC	K	123	Ribulose bisphosphate carboxylase small chain	View
8RUC	L	123	Ribulose bisphosphate carboxylase small chain	View
1GK8	I	125	Ribulose bisphosphate carboxylase small chain 1, chloroplastic	View
1RBL	I	109	Ribulose bisphosphate carboxylase small chain	View
1UZD	C	129	Ribulose bisphosphate carboxylase small chain 2, chloroplastic	View
1WDD	S	121	Ribulose bisphosphate carboxylase small chain, chloroplastic	View
2W7V	A	80	Type II secretion system protein L	View
5IU0	I	123	Ribulose bisphosphate carboxylase small chain 1B, chloroplastic	View

Topology view of query protein [ProLego results]

1uv7A00

Topology Information