Protein Detail

Protein Information

Domain Id	1l3kA01
DB_Source-Class	CATH 3.5, 3.30.70.330
Molecule	Heterogeneous nuclear ribonucleoprotein A1
Residues	84
Sequence
SSE Sequence^*(8)	`EHEEHEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ca.Ea.Ca.0.Ea.0-0.Cp.0.0.0.0-Ea.0.0.0.Ca-Cp.Ca.0.0-0.0.0-0.0-Ea`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1l3kA01

Protein Id: 1l3kA01

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1l3kA01

Protein Id: 1l3kA01

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HEE	Ca.Ea-Cp	True	3E7R:L, 4GV5:A, 4GV5:B, 4GV5:C, 4OWT:C, 4X8W:G, 5TVO:B, 1MHM:B, 2I61:A,	d1ev0a_, d1fjna_, d1icaa_, d1jxca_, d1lira_, d1mm0a_, d1n8ma_, d1olza3, d1pnha_, d1shyb2, d2i61a_, d2pspa2, 1ev0A00, 1jxcA00, 1shyB02, 1wmtA00,
3	EEH	Ea.Ca-0	True	3OW2:T, 1VQO:U, 2PUY:A,	d1vq8u1, d1we9a_, d1wjva1, d2puya_, 1vq8U00,
3	HEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEE	Ea.0-0	True	2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A,	d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
4	EHEE	Ca.Ca.Ea-0.Cp-Ea	True	3KU7:A, 3KU7:B, 3ODV:B, 3ONR:A, 3ONR:B, 3ONR:C, 3ONR:D, 3ONR:E, 3ONR:F, 3ONR:G, 3ONR:H, 3ONR:I, 3ONR:J, 3ONR:K, 3ONR:L,	d1j5ja_, d1ozza_, d1pvza_, d1scoa_, d1sisa_, d1xrsb2, 1i2uA00, 1xrsB01,
4	EEHE	Ea.Ca.0-0.0-0	False

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2XNQ	A	78	Nuclear polyadenylated RNA-binding protein 3	View
3UCG	A	87	Polyadenylate-binding protein 2	View
1H6K	X	77	Nuclear cap-binding protein subunit 2	View
1JMT	A	98	Splicing factor U2AF 35 kDa subunit	View
d1cvja1	--	80	u'Polyadenylate-binding protein 1'	View
d1h6kx_	--	77	u'Nuclear cap-binding protein subunit 2'	View
d1jmta_	--	98	u'Splicing factor U2AF 35 kDa subunit'	View
d1l3ka1	--	84	u'Heterogeneous nuclear ribonucleoprotein A1'	View
d1l3ka2	--	79	u'Heterogeneous nuclear ribonucleoprotein A1'	View
d1wi8a_	--	104	u'Eukaryotic translation initiation factor 4B'	View
1h2vZ00	--	93	Nuclear cap-binding protein subunit 2	View
1jmtA00	--	98	Splicing factor U2AF 35 kDa subunit	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2XCZ	A	114	Possible ATLS1-like light-inducible protein	View
2XS2	A	88	Deleted in azoospermia-like	View
2YWK	A	84	Splicing regulator RBM11	View
3B64	A	112	Macrophage migration inhibitory factor-like protein	View
3BS9	A	79	Nucleolysin TIA-1 isoform p40	View
3BS9	B	79	Nucleolysin TIA-1 isoform p40	View
3FWT	A	116	Macrophage migration inhibitory factor-like protein	View
3KAN	A	117	D-dopachrome decarboxylase	View
3KAN	B	117	D-dopachrome decarboxylase	View
3KAN	C	117	D-dopachrome decarboxylase	View
3KER	A	117	D-dopachrome decarboxylase	View
3KER	B	117	D-dopachrome decarboxylase	View
3KER	C	117	D-dopachrome decarboxylase	View
3KER	D	117	D-dopachrome decarboxylase	View
3MD1	A	83	Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1	View
3MD1	B	79	Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1	View
3MDF	B	83	Peptidyl-prolyl cis-trans isomerase E	View
3RHE	A	109	Uncharacterized protein	View
3T9Z	A	95	Nitrogen regulatory protein P-II (GlnB-3)	View
3T9Z	B	97	Nitrogen regulatory protein P-II (GlnB-3)	View
3T9Z	C	94	Nitrogen regulatory protein P-II (GlnB-3)	View
3T9Z	D	93	Nitrogen regulatory protein P-II (GlnB-3)	View
3T9Z	E	95	Nitrogen regulatory protein P-II (GlnB-3)	View
3T9Z	F	94	Nitrogen regulatory protein P-II (GlnB-3)	View
3ZZY	A	106	Polypyrimidine tract-binding protein 1	View
3ZZY	B	104	Polypyrimidine tract-binding protein 1	View
4C0O	C	93	Serine/arginine-rich splicing factor 1	View
4C0O	D	92	Serine/arginine-rich splicing factor 1	View
4DH4	A	114	Putative macrophage migration inhibitory factor	View
4F25	A	81	Polyadenylate-binding protein 1	View
4FXV	A	83	ELAV-like protein 1	View
4FXV	B	80	ELAV-like protein 1	View
4FXV	C	81	ELAV-like protein 1	View
4FXV	D	77	ELAV-like protein 1	View
4GRN	A	116	Macrophage migration inhibitory factor	View
4GRN	B	116	Macrophage migration inhibitory factor	View
4GRN	C	116	Macrophage migration inhibitory factor	View
4LKB	A	119	Alr4568 protein	View
4LKB	B	120	Alr4568 protein	View
4LKB	C	119	Alr4568 protein	View
4LKB	E	118	Alr4568 protein	View
4LKB	F	119	Alr4568 protein	View
4QU7	A	81	G-rich sequence factor 1	View
4QU7	B	79	G-rich sequence factor 1	View
4QU7	C	79	G-rich sequence factor 1	View
4QU7	D	77	G-rich sequence factor 1	View
4RLE	A	116	Uncharacterized protein YaaQ	View
4RWW	A	113	Lmo2692 protein	View
4RWW	B	106	Lmo2692 protein	View
4RWW	C	103	Lmo2692 protein	View
4TLQ	A	82	CUGBP Elav-like family member 2	View
4TLQ	B	83	CUGBP Elav-like family member 2	View
4USI	A	115	Nitrogen regulatory protein PII	View
4USI	C	109	Nitrogen regulatory protein PII	View
4WPM	A	85	Putative mRNA export protein	View
4WPM	B	85	Putative mRNA export protein	View
4ZKA	A	83	RNA binding protein fox-1 homolog 1	View
4ZKA	B	83	RNA binding protein fox-1 homolog 1	View
4ZKA	C	77	RNA binding protein fox-1 homolog 1	View
4ZKA	D	82	RNA binding protein fox-1 homolog 1	View
4ZKA	E	80	RNA binding protein fox-1 homolog 1	View
4ZKA	F	79	RNA binding protein fox-1 homolog 1	View
5IM0	B	78	Heterogeneous nuclear ribonucleoprotein D0	View
5IQQ	A	83	RNA-binding protein 7	View
5IQQ	B	78	RNA-binding protein 7	View
5IQQ	C	83	RNA-binding protein 7	View
5IQQ	D	81	RNA-binding protein 7	View
5IQQ	E	80	RNA-binding protein 7	View
5IZN	G	90	50S ribosomal protein L25	View
5LXR	A	80	RNA-binding protein 7	View
5TBX	A	83	Cold-inducible RNA-binding protein	View
5TBX	B	92	Cold-inducible RNA-binding protein	View
1U9D	A	120	Uncharacterized protein	View
1UIZ	A	115	Macrophage migration inhibitory factor	View
1UL3	A	95	Nitrogen regulatory protein P-II	View
1URR	A	97	Acylphosphatase-2	View
1UW4	A	91	Regulator of nonsense transcripts 3B	View
2GDG	A	114	Macrophage migration inhibitory factor	View
2HZC	A	87	Splicing factor U2AF 65 kDa subunit	View
2PII	A	112	Nitrogen regulatory protein P-II 1	View

Topology view of query protein [ProLego results]

1l3kA01

Topology Information