ProLego Protein as lego blocks ...
 

Topology view of query protein [ProLego results]

Protein Information
Domain Id 1amxA00
DB_Source-ClassCATH 3.5, 2.60.40.740
MoleculeCollagen adhesin
Residues150
Sequence
SSE Sequence*(13) EEEEEHEEHEEEE
* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]
Protein Topology 

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand]
Ea.Ea.Ea.Ea.Ca.Ca.Ea.Ca.Cp.Ea.Ea.0-Ep.Ep.0.Cp.0.0.0.Ea.0.0.Ea-0.0.0.Ea.0.0.0.0.0.0-0.0.0.Ep.0.0.0.0.0-0.0.Ea.0.0.0.0.0-0.Ep.Cp.Ea.0.0.0-0.0.Ep.Ep.0.0-0.Ea.Ea.0.0-0.Ep.0.0-Ea.0.0-0.Ea-Ep

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1amxA00
shapeImage
Protein Id: 1amxA00

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1amxA00
shapeImage
Protein Id: 1amxA00

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology
#SSE SSE string Contact String Preferrence  ProteinDB  DomainsDB
3 EEE Ea.Ea-Ep True 2XTT:A, 3CFA:L, 3CFA:M, 3CFA:R, 3CFA:S, 3CFH:L, 3CFH:M, 3CFH:R, 3CFH:S, 3LE4:A, 3MLQ:E, 3MLQ:H, 3TVJ:I, 4F98:A, 4GWT:A, 4N7F:A, 4N7F:B, 4REX:A, 5DZD:B, 5E24:B, 5E24:D, 1NH2:C, 1NVP:C, 2A50:A, 2HIP:A, d1gl0i_, d1goia1, d1kbea_, d1mkna_, d1nh2c_, d1nh2d2, d1o9aa1, d1rl2a2, d2dk1a1, d2hipa_, d2ho2a1, d2jmfa1, 1kbeA00, 1mknA00, 1nh2C00, 1nvpC00, 1o9aA01,
3 EEE Ea.Ea-0 True 3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B, d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3 EEH Ea.Ca-Cp True 2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A, d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,
3 HEE Ca.Ea-0 False 3K65:A, d1dwka2, d1h5oa_, 1h5oA00,
3 EEH Ea.Ca-0 True 3OW2:T, 1VQO:U, 2PUY:A, d1vq8u1, d1we9a_, d1wjva1, d2puya_, 1vq8U00,
3 EHE Ca.Cp-Ea False d2d8ra1,
3 EEE Ea.0-Ea False 4C2M:1, 4C2M:L, 4KSN:A, 4SGB:I, 6RXN:A, 2DSX:A, 2RDV:A, 2V3B:B, d1lkoa2, d1pfva3, d1yuza2, d1zina2, d2cona1, d4sgbi_, 2dsxA00, 4sgbI00,
4 EEEE Ea.Ea.Ea-Ep.Ep-0 False 3KVP:A, 3KVP:B, 3KVP:E, 1R8O:B,
4 EEEH Ea.Ea.Ca-0.Cp-0 True 2NYZ:D, d1bb8a_, d1bbga_, d1qk9a_, d2drpa1, d2j01s1, 1bbgA00, 1bbgA00, 1qk9A00, 1ub1A00,
4 EEHE Ea.Ca.Ca-Cp.0-Ea True 4GI3:C, 4L5N:C, 1R0R:I, 2BAY:A, 2F3C:I, 5MNJ:D, d1chca_, d1iw4a_, d1pcea_, d1r0ri_, d2baya_, 1chcA00, 1chcA00, 1iw4A00, 1r0rI00,
5 EEEEH Ea.Ea.Ea.Ca-Ep.0.Cp-0.0-0 True 3PM7:B, 1PCF:A, d1ig4a_, d1pcfa_, 1pcfA00,
Protein In ProLegoDB with identical/similar Topology