Protein Detail

Protein Information

PDBId & Chain	3GHD : A
Molecule	Inosine-5'-monophosphate dehydrogenase related protein II
Residues	68
Sequence
SSE Sequence^*(5)	`EHEEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ca.Ea.Ca-Ep.0.0-0.Ha-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3GHD_A

Protein Id: 3GHD_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3GHD_A

Protein Id: 3GHD_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EHE	Ca.Ca-Ep	True	2X4K:B, 3EJ9:B, 3EJ9:D, 3EJ9:F, 3MB2:B, 3MB2:D, 3MB2:F, 3MB2:H, 3MB2:J, 3MB2:L, 4X1C:B, 2PJR:B,	d3ej9b_,
3	HEE	Ca.Ea-0	False	3K65:A,	d1dwka2, d1h5oa_, 1h5oA00,
3	EEH	Ea.Ca-0	True	3OW2:T, 1VQO:U, 2PUY:A,	d1vq8u1, d1we9a_, d1wjva1, d2puya_, 1vq8U00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2XMJ	A	63	Ssr2857 protein	View
2XMJ	B	63	Ssr2857 protein	View
3DGP	A	62	RNA polymerase II transcription factor B subunit 2	View
3DGP	B	63	RNA polymerase II transcription factor B subunit 5	View
3DLU	A	95	Signal recognition particle 19 kDa protein	View
3DLU	B	93	Signal recognition particle 19 kDa protein	View
3DLU	C	88	Signal recognition particle 19 kDa protein	View
3DLU	D	87	Signal recognition particle 19 kDa protein	View
3ENC	B	78	Uncharacterized protein	View
3GHD	B	68	Inosine-5'-monophosphate dehydrogenase related protein II	View
3HS2	D	56	Antitoxin phd	View
3UEB	A	102	Uncharacterized protein	View
3UEB	B	102	Uncharacterized protein	View
3UEB	C	103	Uncharacterized protein	View
3UEB	D	99	Uncharacterized protein	View
3UEB	E	104	Uncharacterized protein	View
3UEB	F	100	Uncharacterized protein	View
3ZZP	A	74	30S ribosomal protein S6	View
4OI3	A	79	Uncharacterized protein	View
4OI3	B	79	Uncharacterized protein	View
4Q2L	A	64	Major facilitator superfamily MFS_1	View
4WXA	A	84	EKC/KEOPS complex subunit PCC1	View
4WXA	B	84	EKC/KEOPS complex subunit PCC1	View
4WXA	C	78	EKC/KEOPS complex subunit PCC1	View
4XCO	A	85	Signal recognition particle 19 kDa protein	View
4XCO	B	84	Signal recognition particle 19 kDa protein	View
4ZYA	A	65	Asparagine--tRNA ligase, cytoplasmic	View
4ZYA	B	72	Asparagine--tRNA ligase, cytoplasmic	View
5V0S	A	68	Prephenate dehydrogenase	View
5V0S	B	68	Prephenate dehydrogenase	View
1JID	A	114	Signal recognition particle 19 kDa protein	View
1LNG	A	87	Signal recognition particle 19 kDa protein	View
1ZZK	A	80	Heterogeneous nuclear ribonucleoprotein K	View

Topology view of query protein [ProLego results]

3GHD : A

Topology Information