Protein Detail

Protein Information

PDBId & Chain	3G9M : B
Molecule	Glucocorticoid receptor
Residues	78
Sequence
SSE Sequence^*(5)	`EEHHH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ca.Hr.0-Cp.0.0-0.0-0`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3G9M_B

Protein Id: 3G9M_B

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3G9M_B

Protein Id: 3G9M_B

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,
3	HHH	Hr.0-0	True	2ZXX:D, 2ZXX:E, 3H87:D, 3KXE:C, 3KXE:D, 3PN7:D, 4FXE:A, 4FXE:B, 4J2N:B, 4J2N:D, 4QIC:B, 4QIC:D, 4Z8L:C, 5CEG:A, 5CEG:C, 1HWT:C, 1OV9:A, 1T0F:C, 1ZX3:A, 2BSQ:E, 2ER8:A, 5VJI:C, 5WWO:C, 5X3T:A,	d1ov9a_, d1y9ba1, d2bska1, d2bsqe1, 1bpeA01, 1bpeA01, 1uklC00,
4	EEHH	Ea.Ca.Hr-Cp.0-0	True	1A6Y:A, 1CIT:A, 1HCQ:A, 1LAT:A, 2C7A:A, 2HAN:A, 4OLN:A, 4OND:A,	1a6yA00, 1a6yA00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3G9M	A	78	Glucocorticoid receptor	View
1KB6	A	94	Vitamin D3 receptor	View
2HAN	B	87	Ecdysone receptor	View
d3g9ma_	--	78	u'Glucocorticoid receptor'	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
5D1M	B	110	E3 ubiquitin-protein ligase RNF25	View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2X48	A	54	Uncharacterized protein 56	View
2X48	B	54	Uncharacterized protein 56	View
2X48	C	54	Uncharacterized protein 56	View
3AJF	A	89	Suppressor of RNA silencing p3	View
3AJF	B	89	Suppressor of RNA silencing p3	View
3B0Z	B	84	Flagellar biosynthetic protein FlhB	View
3B1S	B	85	Flagellar biosynthetic protein FlhB	View
3B1S	D	84	Flagellar biosynthetic protein FlhB	View
3B1S	F	81	Flagellar biosynthetic protein FlhB	View
3BZY	B	83	T3SS structure protein EscU	View
3C01	E	88	Surface presentation of antigens protein SpaS	View
3C01	F	87	Surface presentation of antigens protein SpaS	View
3C01	G	87	Surface presentation of antigens protein SpaS	View
3C01	H	87	Surface presentation of antigens protein SpaS	View
3G27	A	80	Uncharacterized protein YbcO	View
3G2B	A	90	Coenzyme PQQ synthesis protein D	View
3H34	A	70	Cytochrome c	View
3H4N	A	67	Cytochrome c	View
3H4N	B	68	Cytochrome c	View
3HKL	B	153	Muscle, skeletal receptor tyrosine protein kinase	View
3IC3	A	94	Uncharacterized protein	View
3IC3	B	92	Uncharacterized protein	View
3IC3	C	93	Uncharacterized protein	View
3IC3	D	81	Uncharacterized protein	View
3ML1	B	109	Periplasmic nitrate reductase, electron transfer subunit	View
3ZPV	1	62	Protein pygopus	View
3ZPV	3	62	Protein pygopus	View
3ZPV	9	62	Protein pygopus	View
3ZPV	A	62	Protein pygopus	View
3ZPV	C	62	Protein pygopus	View
3ZPV	E	62	Protein pygopus	View
3ZPV	G	62	Protein pygopus	View
3ZPV	I	62	Protein pygopus	View
3ZPV	K	62	Protein pygopus	View
3ZPV	M	62	Protein pygopus	View
3ZPV	O	62	Protein pygopus	View
3ZPV	Q	62	Protein pygopus	View
3ZPV	S	62	Protein pygopus	View
3ZPV	U	62	Protein pygopus	View
3ZPV	W	62	Protein pygopus	View
3ZPV	Y	62	Protein pygopus	View
4E6K	G	57	Uncharacterized protein	View
4E6K	I	56	Uncharacterized protein	View
4G6T	B	71	Type III effector HopA1	View
4NG2	F	82	Uncharacterized protein	View
4NG2	G	82	Uncharacterized protein	View
4NG2	J	82	Uncharacterized protein	View
4NG2	K	82	Uncharacterized protein	View
5CUL	B	79	Translocation protein in type III secretion	View
5JQ3	B	130	Envelope glycoprotein	View
5L0M	A	96	Nuclear receptor subfamily 5 group A member 2	View
1CMC	A	104		View
1GYO	A	106	Cytochrome C3=26 kDa subunit of A dimeric class III C-type cytochrome	View
1RWJ	A	81	Cytochrome c	View
1T3U	A	90	Cell division protein ZapA	View
1WAD	A	111	Cytochrome c3	View
2A3M	A	107	Cytochrome c class III	View
2CY3	A	118	Cytochrome c3, 13 kDa	View
2VPB	A	57	Pygopus homolog 1	View
2WG7	A	121	Probable phospholipase A2 homolog 2	View

Topology view of query protein [ProLego results]

3G9M : B

Topology Information