ProLego Protein as lego blocks ...
 

Topology view of query protein [ProLego results]

Protein Information
PDBId & Chain3F5V : B
MoleculeDer p 1 allergen
Residues221
Sequence
SSE Sequence*(15) EHHHHEEEHEHEEEE
* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]
Protein Topology 

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand]
Ca.0.Hr.0.Cp.Ea.0.0.Ca.Ca.0.Ea.Ea.0-0.0.Hr.Cp.Ca.0.0.0.0.Ea.0.0.0-0.0.0.0.Ca.0.0.0.Cp.0.0.0-0.0.0.0.0.0.0.0.Cp.0.0-0.0.0.0.Ca.0.0.0.0.Ea-0.0.Hr.0.0.0.0.0.Cp-0.0.Ca.0.0.0.0.Ea-Cp.0.0.0.0.0.0-0.0.Cp.0.0.0-0.Cp.Ca.0.Cp-Ea.0.0.0-Ep.Ca.Cp-0.0-0

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3F5V_B
shapeImage
Protein Id: 3F5V_B

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3F5V_B
shapeImage
Protein Id: 3F5V_B

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology
#SSE SSE string Contact String Preferrence  ProteinDB  DomainsDB
3 HHH 0.Hr-0 False 3V9R:B, 3VIQ:B, 4F9K:A, 4GHJ:B, 4HDD:A, 4TSH:A, 4Z8E:A, 4Z8E:B, 4Z8E:C, 5LUT:C, 5LUT:E, 1NGM:B, 4YC5:A, 4ZN8:A, 5VC9:C, 5X42:B, d1kbha_, d1p94a_, 1kbhA00, 1ngmB00, 1ngmJ00, 1p94A00,
3 HHH Hr.0-Hr False 4XAL:A, 1QRV:A, d1ckta_, d1cuka1, d1mn3a_, d1qrva_, d2fd5a1, 1cktA00, 1cukA03, 1cktA00, 1cukA03, 1qrvA00, 3lriA00,
3 EEE Ea.0-0 True 2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A, d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
3 EHE Ca.0-Ea False d1sddb1, d1ugla_, d1y7ma2, 1uglA00,
3 HEE 0.Ea-0 True 2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A, d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3 EEE Ea.Ea-0 True 3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B, d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
4 HHHH 0.Hr.0-0.Hr-0 False 4Z8T:B,
4 EEEH Ea.0.0-0.0-0 True 1L2W:I, 1RGV:A, 1WZ3:A, 2FGO:A, 4BL0:B, d1l2wi_, d1wz3a1, d2fgoa_,
4 HEEE 0.Ea.Ea-0.0-0 True 2YH9:A, 2YH9:B, 2YH9:C, 3OW2:Z, 3UL5:C, 4YX1:A, 4YX1:B, 5U6Z:A, 1VQO:1, 2QRD:B, d1vq811, d2f1la1, d2qlvb2, 1vq8100, 2f1lA02,
4 EEEE Ea.Ea.0-0.0-0 True 3IGM:A, 3IGM:B, 5DM6:F, 5FGO:A, 5FGO:C, 5FGO:E, 5FGO:F, 2WH7:A, d1pd0a5,
5 HEEEE 0.Ea.Ea.0-0.0.0-0.0-0 False 1JJ2:Y, 1VQO:Z,
Protein In ProLegoDB with identical/similar Topology