Protein Detail

Protein Information

PDBId & Chain	1SRR : A
Molecule	Sporulation initiation phosphotransferase F
Residues	119
Sequence
SSE Sequence^*(10)	`EHEHEHEHEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ca.Ca.0.Ca.Ca.Ca.0.Ca-Ep.0.0.Hp.Ep.Hp.Ep.0-Ca.Ca.0.0.0.0.Ca-Ep.0.0.0.0.0-0.0.0.0.Ca-0.0.0.0-0.0.0-0.Hr-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1SRR_A

Protein Id: 1SRR_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1SRR_A

Protein Id: 1SRR_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EHE	Ca.Ca-Ep	True	2X4K:B, 3EJ9:B, 3EJ9:D, 3EJ9:F, 3MB2:B, 3MB2:D, 3MB2:F, 3MB2:H, 3MB2:J, 3MB2:L, 4X1C:B, 2PJR:B,	d3ej9b_,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2QVG	A	126	Two component response regulator	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YXB	A	134	Coenzyme B12-dependent mutase	View
2ZAY	A	123	Response regulator receiver protein	View
2ZAY	B	123	Response regulator receiver protein	View
3B2N	A	120	Similar to two-component response regulator	View
3CFY	A	130	Putative LuxO repressor protein	View
3CG0	C	126	Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor	View
3CG0	D	126	Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor	View
3CNB	A	124	DNA-binding response regulator, merR family	View
3CNB	B	124	DNA-binding response regulator, merR family	View
3CNB	C	123	DNA-binding response regulator, merR family	View
3CU5	B	129	Two component transcriptional regulator, AraC family	View
3D1P	A	118	Thiosulfate sulfurtransferase RDL1, mitochondrial	View
3EOD	A	115	Regulator of RpoS	View
3EQZ	A	124	Response regulator	View
3EQZ	B	125	Response regulator	View
3EUL	A	123	Probable transcriptional regulatory protein NarL	View
3EUL	B	124	Probable transcriptional regulatory protein NarL	View
3EUL	C	120	Probable transcriptional regulatory protein NarL	View
3F6C	A	129	Positive transcription regulator EvgA	View
3F6C	B	128	Positive transcription regulator EvgA	View
3F6P	A	120	Transcriptional regulatory protein YycF	View
3FNI	A	153	Putative diflavin flavoprotein A 3	View
3GK5	A	100	Uncharacterized protein	View
3GT7	A	132	Signal transduction histidine kinase	View
3H1G	A	123	Chemotaxis protein CheY homolog	View
3HDG	A	120	Uncharacterized protein	View
3HDG	B	119	Uncharacterized protein	View
3HDG	D	120	Uncharacterized protein	View
3HDG	E	120	Uncharacterized protein	View
3HV2	A	136	Response regulator/HD domain protein	View
3HV2	B	125	Response regulator/HD domain protein	View
3I42	A	118	Response regulator receiver domain protein (CheY-like)	View
3IC5	A	112	Lysine dehydrogenase	View
3IC5	B	112	Lysine dehydrogenase	View
3ILH	A	133	Two component response regulator	View
3JTE	A	126	Response regulator receiver protein	View
3LTE	A	118	Response regulator	View
3LTE	B	120	Response regulator	View
3LTE	C	119	Response regulator	View
3LTE	D	123	Response regulator	View
3LTE	E	123	Response regulator	View
3LTE	F	123	Response regulator	View
3LTE	G	121	Response regulator	View
3LTE	H	123	Response regulator	View
3LTE	I	119	Response regulator	View
3LTE	J	120	Response regulator	View
3LTE	K	120	Response regulator	View
3LTE	L	118	Response regulator	View
3LTE	M	118	Response regulator	View
3LTE	N	119	Response regulator	View
3LTE	O	117	Response regulator	View
3LTE	P	123	Response regulator	View
3LTE	Q	117	Response regulator	View
3LTE	R	118	Response regulator	View
3LTE	S	120	Response regulator	View
3LTE	T	119	Response regulator	View
3LTE	U	119	Response regulator	View
3LTE	V	118	Response regulator	View
3LTE	W	120	Response regulator	View
3LTE	X	118	Response regulator	View
3LUA	A	124	Response regulator receiver protein	View
3M6M	D	118	Sensory/regulatory protein RpfC	View
3M6M	E	113	Sensory/regulatory protein RpfC	View
3M6M	F	115	Sensory/regulatory protein RpfC	View
3Q15	C	116	Sporulation initiation phosphotransferase F	View
3S5P	B	125	Ribose 5-phosphate isomerase	View
3T8Y	A	134	Chemotaxis response regulator protein-glutamate methylesterase	View
3T8Y	B	138	Chemotaxis response regulator protein-glutamate methylesterase	View
3TO5	A	124	CheY homolog	View
3W9S	A	116	OmpR family response regulator in two-component regulatory system with BasS	View
3W9S	B	117	OmpR family response regulator in two-component regulatory system with BasS	View
4D6Y	A	121	CbxX/CfqX superfamily:Chaperonin clpA/B:Response regulator receiver:Sigma-54 factor interaction domain:Helix-turn-helix, Fis	View
4D6Y	B	121	CbxX/CfqX superfamily:Chaperonin clpA/B:Response regulator receiver:Sigma-54 factor interaction domain:Helix-turn-helix, Fis	View
4FAK	A	163	Ribosomal RNA large subunit methyltransferase H	View
4H60	A	120	Chemotaxis protein CheY	View
4JEN	A	119	CMP N-GLYCOSIDASE	View
4JEN	B	122	CMP N-GLYCOSIDASE	View
4JEN	C	113	CMP N-GLYCOSIDASE	View
4KXL	A	135	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	View
4KXL	B	126	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	View
4KXL	C	134	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	View
4KXL	D	136	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	View
4LDA	A	124	TadZ	View
4LDA	B	125	TadZ	View
4LDA	C	125	TadZ	View
4LDA	D	118	TadZ	View
4LDA	E	117	TadZ	View
4LDA	F	118	TadZ	View
4LDA	G	117	TadZ	View
4LDA	H	124	TadZ	View
4MYR	A	118	CpaE2 pilus assembly protein	View
4MYR	B	120	CpaE2 pilus assembly protein	View
4MYR	C	121	CpaE2 pilus assembly protein	View
4MYR	D	117	CpaE2 pilus assembly protein	View
4N0P	A	134	Pilus assembly protein CpaE	View
4N0P	B	131	Pilus assembly protein CpaE	View
4N0P	C	133	Pilus assembly protein CpaE	View
4N0P	D	132	Pilus assembly protein CpaE	View
4N0P	E	123	Pilus assembly protein CpaE	View
4N0P	F	134	Pilus assembly protein CpaE	View
4N0P	G	132	Pilus assembly protein CpaE	View
4N0P	H	124	Pilus assembly protein CpaE	View
4P5E	A	140	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	View
4P5E	B	136	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	View
4QPJ	C	120	Cell cycle response regulator CtrA	View
4QYW	A	117	Chemotaxis protein CheY	View
4R3U	C	131	2-hydroxyisobutyryl-CoA mutase small subunit	View
4R3U	D	129	2-hydroxyisobutyryl-CoA mutase small subunit	View
4UHJ	A	126	Transcriptional regulatory protein CpxR	View
4UHJ	B	126	Transcriptional regulatory protein CpxR	View
4UHJ	C	121	Transcriptional regulatory protein CpxR	View
4WXM	A	126	Transcriptional regulator FleQ	View
4WXM	B	129	Transcriptional regulator FleQ	View
4WXM	C	126	Transcriptional regulator FleQ	View
4WXM	D	129	Transcriptional regulator FleQ	View
4WXM	E	126	Transcriptional regulator FleQ	View
4ZYL	A	143	Response regulator receiver (CheY-like protein)	View
4ZYL	B	144	Response regulator receiver (CheY-like protein)	View
5BRJ	A	140	Two component response regulator	View
5DCL	A	117	PhoB family transcriptional regulator	View
5DCL	B	117	PhoB family transcriptional regulator	View
5HM6	A	119	Two-component system response regulator protein	View
5HM6	B	119	Two-component system response regulator protein	View
5I4C	A	131	Transcriptional regulatory protein RcsB	View
5IFZ	A	118	Ribose 5-phosphate isomerase	View
5IFZ	B	117	Ribose 5-phosphate isomerase	View
5TE9	A	137	Response regulator receiver protein	View
5TQJ	A	124	Response regulator receiver protein	View
1DBW	A	123	Transcriptional regulatory protein FixJ	View
1DZ3	A	123	Stage 0 sporulation protein A	View
1JBE	A	126	Chemotaxis protein CheY	View
1K66	A	149	Response regulator	View
1K68	A	139	Response regulator	View
1MB3	A	117	Polar differentiation response regulator	View
1MVO	A	121	Alkaline phosphatase synthesis transcriptional regulatory protein PhoP	View
1QKK	A	140	C4-dicarboxylate transport transcriptional regulatory protein DctD	View
1XHF	A	117	Aerobic respiration control protein ArcA	View
1Y80	A	125	5-methyltetrahydrofolate--homocysteine S-methyltransferase	View
1ZGZ	A	118	TorCAD operon transcriptional regulatory protein TorR	View
2GKG	A	122	Response regulator homolog	View
2JK1	A	138	Hydrogenase transcriptional regulatory protein hupR1	View
2QR3	A	121	Two-component system response regulator	View
2R25	B	133	Osmosensing histidine protein kinase SLN1	View
2RDM	A	122	Response regulator receiver protein	View

Topology view of query protein [ProLego results]

1SRR : A

Topology Information