Protein Detail

Protein Information

PDBId & Chain	1B33 : N
Molecule	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core
Residues	67
Sequence
SSE Sequence^*(5)	`EHEHE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Cp.Ca.Ca-Ea.0.Ep-Cp.0-Ea`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1B33_N

Protein Id: 1B33_N

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1B33_N

Protein Id: 1B33_N

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EHE	Ca.Cp-Ea	False		d2d8ra1,
3	EHE	Ca.Ca-Ep	True	2X4K:B, 3EJ9:B, 3EJ9:D, 3EJ9:F, 3MB2:B, 3MB2:D, 3MB2:F, 3MB2:H, 3MB2:J, 3MB2:L, 4X1C:B, 2PJR:B,	d3ej9b_,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
1R8H	A	86	Regulatory protein E2	View
d1b33n_	--	67	u'Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core'	View
d1r8ha_	--	86	u'Regulatory protein E2'	View
1r8hA00	--	86	Regulatory protein E2	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2ZW1	A	57	Protein LG	View
3FIL	A	55	Immunoglobulin G-binding protein G	View
3FIL	B	56	Immunoglobulin G-binding protein G	View
3MP9	A	61	Immunoglobulin G-binding protein G	View
3MP9	B	61	Immunoglobulin G-binding protein G	View
4I6P	B	82	Partitioning defective 3 homolog	View
4KT5	C	88	Uncharacterized protein	View
4WH4	A	56	Immunoglobulin G-binding protein G	View
4WH4	B	56	Immunoglobulin G-binding protein G	View
1EM7	A	56	Immunoglobulin G-binding protein G	View
1MI0	A	61	Protein LG	View
1QBJ	A	65	Double-stranded RNA-specific adenosine deaminase	View
2IGD	A	61	Immunoglobulin G-binding protein G	View
2ON8	A	56	Immunoglobulin G-binding protein G	View
4GLS	C	56		View
2GB1	A	56	Immunoglobulin G-binding protein G	View
1P7E	A	56	Immunoglobulin G-binding protein G	View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YX5	A	82	Phosphoribosylformylglycinamidine synthase subunit PurS	View
4KSO	B	102	Circadian clock protein KaiB	View
5DM6	W	55	50S ribosomal protein L30	View
1BXY	A	60	50S ribosomal protein L30	View
1T4A	A	76	Phosphoribosylformylglycinamidine synthase subunit PurS	View
1VQ3	A	86	Phosphoribosylformylglycinamidine synthase subunit PurS	View
2DGB	A	81	Phosphoribosylformylglycinamidine synthase subunit PurS	View

Topology view of query protein [ProLego results]

1B33 : N

Topology Information