Protein Detail

Protein Information

PDBId & Chain	5HMB : A
Molecule	Azi13
Residues	125
Sequence
SSE Sequence^*(8)	`HEEHEEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.Ea.Ca.Ca.0.Ea.Ea-Cp.Cp.0.Cp.Ep.Ep-Hr.0.Ea.Ca.Ea-0.0.Ep.Cp-0.0.0-0.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 5HMB_A

Protein Id: 5HMB_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 5HMB_A

Protein Id: 5HMB_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,
3	EEE	Ea.Ea-Ep	True	2XTT:A, 3CFA:L, 3CFA:M, 3CFA:R, 3CFA:S, 3CFH:L, 3CFH:M, 3CFH:R, 3CFH:S, 3LE4:A, 3MLQ:E, 3MLQ:H, 3TVJ:I, 4F98:A, 4GWT:A, 4N7F:A, 4N7F:B, 4REX:A, 5DZD:B, 5E24:B, 5E24:D, 1NH2:C, 1NVP:C, 2A50:A, 2HIP:A,	d1gl0i_, d1goia1, d1kbea_, d1mkna_, d1nh2c_, d1nh2d2, d1o9aa1, d1rl2a2, d2dk1a1, d2hipa_, d2ho2a1, d2jmfa1, 1kbeA00, 1mknA00, 1nh2C00, 1nvpC00, 1o9aA01,
4	HEEE	Ca.0.Ea-Cp.Ep-Ca	False		d1qmea1, d1qmea2,
6	EHEEEE	Ca.Ca.0.Ea.Ea-0.Cp.Ep.Ep-Ea.Ca.Ea-Ep.Cp-0	False	2FUJ:A,	d2fuja1,
7	EEHEEEE	Ea.Ca.Ca.0.Ea.Ea-Cp.0.Cp.Ep.Ep-0.Ea.Ca.Ea-0.Ep.Cp-0.0-0	False	3ESI:A, 3ESI:C, 3ESI:D,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3BLZ	A	123	Uncharacterized protein	View
3BLZ	B	123	Uncharacterized protein	View
3BLZ	C	123	Uncharacterized protein	View
3BLZ	D	123	Uncharacterized protein	View
3BLZ	E	123	Uncharacterized protein	View
3BLZ	F	122	Uncharacterized protein	View
3BLZ	G	123	Uncharacterized protein	View
3BLZ	H	122	Uncharacterized protein	View
3BLZ	I	122	Uncharacterized protein	View
3BLZ	J	123	Uncharacterized protein	View
3BLZ	K	122	Uncharacterized protein	View
3BLZ	L	122	Uncharacterized protein	View
3BNV	B	135	Cj0977	View
3BNV	E	140	Cj0977	View
3BNV	G	128	Cj0977	View
3DUK	C	122	Uncharacterized protein	View
3F14	A	109	Uncharacterized protein	View
3F5O	A	138	Acyl-coenzyme A thioesterase 13	View
3F5O	B	136	Acyl-coenzyme A thioesterase 13	View
3F5O	C	137	Acyl-coenzyme A thioesterase 13	View
3F5O	D	137	Acyl-coenzyme A thioesterase 13	View
3F5O	E	138	Acyl-coenzyme A thioesterase 13	View
3F5O	F	138	Acyl-coenzyme A thioesterase 13	View
3F5O	G	136	Acyl-coenzyme A thioesterase 13	View
3F5O	H	138	Acyl-coenzyme A thioesterase 13	View
3G16	A	152	Uncharacterized protein	View
3G16	B	149	Uncharacterized protein	View
3GT2	A	128	Uncharacterized protein	View
3GWR	A	122	Uncharacterized protein	View
3GWR	B	123	Uncharacterized protein	View
3GZR	A	140	Uncharacterized protein	View
3GZR	B	139	Uncharacterized protein	View
3HG9	A	119	PilM	View
3HG9	B	120	PilM	View
3NV0	B	136	NTF2-related export protein	View
3R34	A	141	4-hydroxybenzoyl-CoA thioesterase	View
3R34	B	140	4-hydroxybenzoyl-CoA thioesterase	View
3S4K	A	124	Putative esterase Rv1847	View
3S4K	B	124	Putative esterase Rv1847	View
3UJM	A	117	Rasputin, isoform G	View
3UJM	B	117	Rasputin, isoform G	View
4A0Z	B	138	Transcription factor FapR	View
4F0H	B	138	Ribulose bisphosphate carboxylase small chain	View
4FCJ	A	128	Ras GTPase-activating protein-binding protein 1	View
4FCJ	B	127	Ras GTPase-activating protein-binding protein 1	View
4H4G	A	135	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	View
4H4G	B	125	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	View
4H4G	C	137	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	View
4H4G	D	139	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	View
4H4G	E	137	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	View
4H4G	F	138	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	View
4H4G	H	132	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	View
4JM1	A	83	Uncharacterized protein	View
4M20	A	121	Uncharacterized protein	View
4M20	B	121	Uncharacterized protein	View
4M20	C	121	Uncharacterized protein	View
4M20	D	120	Uncharacterized protein	View
4ORD	A	138	Uncharacterized protein	View
4ORD	B	138	Uncharacterized protein	View
4ORD	C	138	Uncharacterized protein	View
4ORD	D	138	Uncharacterized protein	View
5AYS	C	109	Uncharacterized protein	View
5AYS	D	109	Uncharacterized protein	View
5BUW	A	144	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	View
5BUW	B	144	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	View
5BUY	C	139	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	View
1BWV	S	136	Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit	View
1BXN	I	129	Ribulose bisphosphate carboxylase small chain, chromosomal	View
1GY6	A	125	Nuclear transport factor 2	View
1GY7	A	121	Nuclear transport factor 2	View
1JKG	A	139	NTF2-related export protein 1	View
1Q40	B	180	mRNA export factor MEX67	View
1Q4U	A	140	4-hydroxybenzoyl-CoA thioesterase	View
1WLU	A	117	Phenylacetic acid degradation protein PaaI	View
1YOC	A	145	Uncharacterized protein	View
1Z6B	A	142	Fatty acid synthesis protein	View
1ZO2	A	124	Uncharacterized protein	View
2PIM	A	127	Phenylacetic acid degradation-related protein	View

Topology view of query protein [ProLego results]

5HMB : A

Topology Information