Protein Detail

Protein Information

PDBId & Chain	3BB5 : E
Molecule	Stress responsive alpha-beta
Residues	98
Sequence
SSE Sequence^*(7)	`EHEEHHE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.Ca.Ea.Ca.Hr.0-0.0.Cp.0.0-Ea.0.0.0-Cp.Ha.0-0.0-Ea`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3BB5_E

Protein Id: 3BB5_E

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3BB5_E

Protein Id: 3BB5_E

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HEE	Ca.Ea-0	False	3K65:A,	d1dwka2, d1h5oa_, 1h5oA00,
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,
3	HHE	Hr.0-0	True	2ZXX:D, 2ZXX:E, 3H87:D, 3KXE:C, 3KXE:D, 3PN7:D, 4FXE:A, 4FXE:B, 4J2N:B, 4J2N:D, 4QIC:B, 4QIC:D, 4Z8L:C, 5CEG:A, 5CEG:C, 1HWT:C, 1OV9:A, 1T0F:C, 1ZX3:A, 2BSQ:E, 2ER8:A, 5VJI:C, 5WWO:C, 5X3T:A,	d1ov9a_, d1y9ba1, d2bska1, d2bsqe1, 1bpeA01, 1bpeA01, 1uklC00,
4	HEEH	Ca.Ea.Ca-0.Cp-0	False		d1yc0i_,
4	EEHH	Ea.Ca.Hr-Cp.0-0	True	1A6Y:A, 1CIT:A, 1HCQ:A, 1LAT:A, 2C7A:A, 2HAN:A, 4OLN:A, 4OND:A,	1a6yA00, 1a6yA00,
5	EEHHE	Ea.Ca.Hr.0-Cp.0.0-0.0-0	True	3G9M:A, 3G9M:B, 1KB6:A, 2HAN:B,	d3g9ma_,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3BB5	A	97	Stress responsive alpha-beta	View
3BB5	B	97	Stress responsive alpha-beta	View
3BB5	C	97	Stress responsive alpha-beta	View
3BB5	D	102	Stress responsive alpha-beta	View
3BB5	F	97	Stress responsive alpha-beta	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2ZDO	A	108	Heme oxygenase (staphylobilin-producing) 1	View
2ZDO	B	108	Heme oxygenase (staphylobilin-producing) 1	View
2ZDO	C	108	Heme oxygenase (staphylobilin-producing) 1	View
2ZDO	D	109	Heme oxygenase (staphylobilin-producing) 1	View
2ZDP	A	110	Heme oxygenase (staphylobilin-producing) 2	View
2ZDP	B	110	Heme oxygenase (staphylobilin-producing) 2	View
3BGU	A	104	Uncharacterized protein	View
3BM7	A	102	Uncharacterized protein	View
3BN7	A	99	Uncharacterized protein	View
3HF5	C	110	4-methylmuconolactone methylisomerase	View
3HF5	D	109	4-methylmuconolactone methylisomerase	View
3HX9	A	101	Heme-degrading monooxygenase HmoB	View
3HX9	B	98	Heme-degrading monooxygenase HmoB	View
3KG0	A	97	SnoaB	View
3KG0	B	98	SnoaB	View
3KG0	C	97	SnoaB	View
3KKF	A	100	Putative flavoredoxin	View
3LO3	E	93	Uncharacterized protein	View
3LO3	J	93	Uncharacterized protein	View
3LO3	K	93	Uncharacterized protein	View
3LO3	M	93	Uncharacterized protein	View
3LO3	O	93	Uncharacterized protein	View
3LO3	T	93	Uncharacterized protein	View
3LO3	W	93	Uncharacterized protein	View
3N01	A	87	Receptor-type tyrosine-protein phosphatase-like N	View
3N01	B	84	Receptor-type tyrosine-protein phosphatase-like N	View
3QMQ	A	97	Autoinducer-2 (AI-2) modifying protein LsrG	View
3QMQ	B	97	Autoinducer-2 (AI-2) modifying protein LsrG	View
3QMQ	C	99	Autoinducer-2 (AI-2) modifying protein LsrG	View
3QMQ	D	99	Autoinducer-2 (AI-2) modifying protein LsrG	View
4DN9	A	95	Antibiotic biosynthesis monooxygenase	View
4DN9	B	94	Antibiotic biosynthesis monooxygenase	View
4HL9	A	91	Antibiotic biosynthesis monooxygenase	View
4HL9	B	91	Antibiotic biosynthesis monooxygenase	View
4HL9	C	91	Antibiotic biosynthesis monooxygenase	View
4HL9	D	91	Antibiotic biosynthesis monooxygenase	View
4HL9	E	91	Antibiotic biosynthesis monooxygenase	View
4HL9	F	91	Antibiotic biosynthesis monooxygenase	View
4HL9	G	91	Antibiotic biosynthesis monooxygenase	View
4HL9	H	91	Antibiotic biosynthesis monooxygenase	View
4HL9	I	91	Antibiotic biosynthesis monooxygenase	View
4HTI	A	88	Receptor-type tyrosine-protein phosphatase N2	View
4JCU	B	128	5-carboxymethyl-2-hydroxymuconate isomerase	View
4LBH	A	94	Putative uncharacterized protein	View
4ZA1	A	99	NosA	View
4ZA1	B	90	NosA	View
4ZOS	B	97	protein YE0340 from Yersinia enterocolitica subsp. enterocolitica 8081	View
4ZOS	D	98	protein YE0340 from Yersinia enterocolitica subsp. enterocolitica 8081	View
1IUJ	A	102	TT1380 protein	View
1LQ9	A	112	ActVA 6 protein	View
1TR0	A	106	Stable protein 1	View
1TUV	A	103	Probable quinol monooxygenase YgiN	View
1Y0H	A	101	Putative monooxygenase Rv0793	View
2FB0	A	91	Uncharacterized protein	View
2QYC	A	95	Uncharacterized protein	View

Topology view of query protein [ProLego results]

3BB5 : E

Topology Information