Protein Detail

Protein Information

PDBId & Chain	5G38 : A
Molecule	Photosystem II manganese-stabilizing polypeptide
Residues	172
Sequence
SSE Sequence^*(15)	`EEEEEEEEEEEEEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ea.0.0.Ea.0.Ep.Ea.0.0.0.Ea.Ea.Ea-0.Ea.0.0.Ea.0.0.0.0.Ea.Ea.Ep.Ep-0.Ea.0.0.Ea.0.0.0.Ea.Ep.0.Ea-0.Ep.0.Ea.Ep.Ea.0.0.0.0.0-0.0.0.0.0.0.0.0.Ea.0-0.Ep.0.0.0.Ep.0.0.Ep-0.Ea.0.0.0.0.0.0-0.0.0.0.0.0.0-0.0.0.0.0.0-Ea.0.0.0.Ep-0.Ea.0.0-Ep.Ep.Ep-0.Ea-Ep`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 5G38_A

Protein Id: 5G38_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 5G38_A

Protein Id: 5G38_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEE	Ea.0-Ea	False	4C2M:1, 4C2M:L, 4KSN:A, 4SGB:I, 6RXN:A, 2DSX:A, 2RDV:A, 2V3B:B,	d1lkoa2, d1pfva3, d1yuza2, d1zina2, d2cona1, d4sgbi_, 2dsxA00, 4sgbI00,
3	EEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEE	0.Ep-0	False		d1h6wa1,
3	EEE	Ep.Ea-0	False	1I5K:A,
3	EEE	Ea.0-0	True	2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A,	d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
3	EEE	0.0-Ea	True	3S2R:A, 3S2R:B, 4EZF:A, 4EZF:B, 4OOA:A, 4OOA:B, 4OOA:C, 4OOA:D, 4OOA:E, 4OOA:F, 4R10:B,	d1clvi_, d1k91a_, 2o9uX00,
3	EEE	0.Ea-Ea	False	3QTE:A, 3QTE:B, 3QTE:C, 5J4S:B, 2J5L:A,	d1bdsa_, d1ut3a_, d2j4wd1, d2nn6i2, 1bdsA00, 1bdsA00,
3	EEE	Ea.Ea-Ep	True	2XTT:A, 3CFA:L, 3CFA:M, 3CFA:R, 3CFA:S, 3CFH:L, 3CFH:M, 3CFH:R, 3CFH:S, 3LE4:A, 3MLQ:E, 3MLQ:H, 3TVJ:I, 4F98:A, 4GWT:A, 4N7F:A, 4N7F:B, 4REX:A, 5DZD:B, 5E24:B, 5E24:D, 1NH2:C, 1NVP:C, 2A50:A, 2HIP:A,	d1gl0i_, d1goia1, d1kbea_, d1mkna_, d1nh2c_, d1nh2d2, d1o9aa1, d1rl2a2, d2dk1a1, d2hipa_, d2ho2a1, d2jmfa1, 1kbeA00, 1mknA00, 1nh2C00, 1nvpC00, 1o9aA01,
4	EEEE	0.0.Ea-0.0-0	True	3ZIA:I, 3ZIA:S, 5LSL:E, 5LSL:G, 5LSL:H, 2DSR:G,	d2dsrg1,
4	EEEE	0.Ea.0-0.Ea-0	False	3EB5:A, 4AUQ:B, 4AUQ:E,
4	EEEE	Ea.0.0-0.0-0	True	1L2W:I, 1RGV:A, 1WZ3:A, 2FGO:A, 4BL0:B,	d1l2wi_, d1wz3a1, d2fgoa_,
4	EEEE	Ea.Ea.Ea-Ep.Ep-Ea	True	4AY9:B, 4AY9:E, 4AY9:H, 4YU8:A, 1EJA:B, 1HCN:B,	d1hcnb_, d1ne3a_, d1xwdb1, 1hcnB00, 1xwdB00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3C9A	A	208	Protein giant-lens	View
3C9A	B	207	Protein giant-lens	View
3CQO	B	293	FBP32	View
3EGA	A	214	E3 ubiquitin-protein ligase pellino homolog 2	View
3GF6	B	213	Uncharacterized protein	View
3LND	A	197	Cadherin-6	View
3MBE	C	189	T-cell receptor alpha chain C region	View
3MBE	G	189	T-cell receptor alpha chain C region	View
3ML3	A	156	Outer membrane protein IcsA autotransporter	View
3NCE	B	206	Prolactin receptor	View
3PVE	A	175	Agrin	View
3Q48	A	194	Chaperone CupB2	View
3RNQ	B	184	Programmed cell death 1 ligand 2	View
3SKN	A	194	T-cell receptor alpha chain C region	View
3SKN	C	194	T-cell receptor alpha chain C region	View
3SKN	E	194	T-cell receptor alpha chain C region	View
3UJO	A	253	Lectin alpha chain	View
3UP1	A	201	Interleukin-7 receptor subunit alpha	View
3W9A	B	235	Uncharacterized protein	View
3W9A	C	233	Uncharacterized protein	View
4B9F	A	152	Cellulosomal-scaffolding protein A	View
4B9F	B	152	Cellulosomal-scaffolding protein A	View
4BY2	A	154	Anastral spindle 2, isoform A	View
4BY2	B	155	Anastral spindle 2, isoform A	View
4BY2	C	155	Anastral spindle 2, isoform A	View
4FA8	A	188	Secreted protein BARF1	View
4FA8	B	189	Secreted protein BARF1	View
4FA8	D	188	Secreted protein BARF1	View
4H8W	C	176	T-cell surface glycoprotein CD4	View
4JRA	D	93	Synaptic vesicle glycoprotein 2C	View
4LE3	A	249	Beta-glucanase	View
4LE3	B	245	Beta-glucanase	View
4LE3	C	242	Beta-glucanase	View
4LE3	D	247	Beta-glucanase	View
4LXO	B	184	Fibronectin	View
4W6Y	A	146	FedF	View
4YFE	A	193	Receptor-type tyrosine-protein phosphatase delta	View
4YZ0	A	198	Pectate lyase	View
4YZ0	B	195	Pectate lyase	View
5C0C	D	200	T-cell receptor alpha chain C region	View
5C14	B	201	Platelet endothelial cell adhesion molecule	View
5CAY	B	150	T-cell surface glycoprotein CD4	View
5CO1	B	205	Uncharacterized protein	View
5DBL	A	130	Surface protein G	View
5DZE	A	199	Putative uncharacterized protein	View
5EWO	A	214	Structural protein	View
5F6K	A	176	Set1/Ash2 histone methyltransferase complex subunit ASH2	View
5F6K	B	178	Set1/Ash2 histone methyltransferase complex subunit ASH2	View
5F6L	B	178	Set1/Ash2 histone methyltransferase complex subunit ASH2	View
5J11	B	196	Interleukin-7 receptor subunit alpha	View
5JMC	H	89	Synaptic vesicle glycoprotein 2C	View
5LNG	A	152	Hypothetical fimbrial-like protein ydeQ	View
5LNG	B	154	Hypothetical fimbrial-like protein ydeQ	View
5LNG	D	151	Hypothetical fimbrial-like protein ydeQ	View
5M5E	B	203	Interleukin-2 receptor subunit beta	View
1AT0	A	142	Protein hedgehog	View
1CD9	B	206	Granulocyte colony-stimulating factor receptor	View
1F6F	B	195	Prolactin receptor	View
1PZ7	A	188	Agrin	View
1QR4	A	175	Tenascin	View
1RID	A	244	Complement control protein C3	View
2B0R	A	164	Adenylyl cyclase-associated protein	View
2GK0	B	211	Ighg protein	View
2VM9	A	252	Discoidin-2	View
3TIP	A	132	Surface protein G	View

Topology view of query protein [ProLego results]

5G38 : A

Topology Information