Protein Detail

Protein Information

PDBId & Chain	3ARA : A
Molecule	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial
Residues	125
Sequence
SSE Sequence^*(12)	`EEEEEEHEEEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.0.Ea.0.0.0.Ca.0.0.Ea.0-0.0.0.0.0.Ea.0.Ea.0.Ea-0.0.0.0.0.Ea.0.0.0-Ea.0.0.0.0.Ep.Ca.Ep-0.0.0.0.0.0.Ca-0.0.0.Ea.0.Ea-0.0.Ep.0.0-0.0.Ea.0-0.0.0-0.Ea-0`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3ARA_A

Protein Id: 3ARA_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3ARA_A

Protein Id: 3ARA_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEE	Ea.0-0	True	2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A,	d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
3	EEE	0.0-Ea	True	3S2R:A, 3S2R:B, 4EZF:A, 4EZF:B, 4OOA:A, 4OOA:B, 4OOA:C, 4OOA:D, 4OOA:E, 4OOA:F, 4R10:B,	d1clvi_, d1k91a_, 2o9uX00,
3	EEE	Ea.0-Ea	False	4C2M:1, 4C2M:L, 4KSN:A, 4SGB:I, 6RXN:A, 2DSX:A, 2RDV:A, 2V3B:B,	d1lkoa2, d1pfva3, d1yuza2, d1zina2, d2cona1, d4sgbi_, 2dsxA00, 4sgbI00,
4	EEEE	0.0.Ea-0.0-0	True	3ZIA:I, 3ZIA:S, 5LSL:E, 5LSL:G, 5LSL:H, 2DSR:G,	d2dsrg1,
4	EEEE	0.Ea.0-0.0-0	True	2YNZ:A, 2YNZ:B, 2YNZ:C, 3C9I:A, 3C9I:B, 3C9I:C, 3C9I:D, 3C9I:E, 3C9I:F, 3ZMF:C, 5BU5:A, 5BU5:B, 5BU5:C, 5BU5:D, 5BU5:E, 5BU5:F, 5BU8:A, 5BU8:B,
4	EEEE	Ea.0.0-0.0-0	True	1L2W:I, 1RGV:A, 1WZ3:A, 2FGO:A, 4BL0:B,	d1l2wi_, d1wz3a1, d2fgoa_,
4	EEEE	0.Ea.0-0.Ea-0	False	3EB5:A, 4AUQ:B, 4AUQ:E,
5	EEEEE	0.Ea.0.0-0.0.0-0.0-0	True		d2fdoa1, d3caoa_, 3caoA00,
6	EEEEEH	0.Ea.0.0.0-0.0.0.0-0.0.0-0.0-0	False	3CAO:A,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3ARA	B	125	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial	View
3ARA	C	125	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial	View
5F9K	B	130	Deoxyuridine 5'-triphosphate nucleotidohydrolase	View
5F9K	C	128	Deoxyuridine 5'-triphosphate nucleotidohydrolase	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3B9K	E	118	T-cell surface glycoprotein CD8 alpha chain	View
3C3I	D	130	Deoxyuridine triphosphatase	View
3HZA	A	162	Deoxyuridine 5'-triphosphate nucleotidohydrolase	View
3KCP	B	163	Cellulosome anchoring protein cohesin region	View
3LQW	A	129	Deoxyuridine 5'-triphosphate nucleotidohydrolase, putative	View
3P48	C	128	Deoxyuridine 5'-triphosphate nucleotidohydrolase	View
3SO2	A	137	Putative uncharacterized protein	View
3TQ5	A	113	Pr95	View
3TQZ	A	136	Deoxyuridine 5'-triphosphate nucleotidohydrolase	View
3V4H	A	131	Uncharacterized protein	View
3V4H	B	129	Uncharacterized protein	View
43C9	F	113	Ig heavy chain V region PJ14	View
43C9	H	113	Ig heavy chain V region PJ14	View
4B0H	A	130	Probable deoxyuridine 5'-triphosphate nucleotidohydrolase YncF	View
4B0H	B	143	Probable deoxyuridine 5'-triphosphate nucleotidohydrolase YncF	View
4B0H	C	143	Probable deoxyuridine 5'-triphosphate nucleotidohydrolase YncF	View
4FL4	B	165	Scaffolding dockerin binding protein A	View
4FL4	H	165	Scaffolding dockerin binding protein A	View
4GK6	A	136	Deoxyuridine 5'-triphosphate nucleotidohydrolase	View
4TV4	A	145	Uncharacterized protein	View
4TV4	B	143	Uncharacterized protein	View
4TV4	C	144	Uncharacterized protein	View
5DMD	A	144	Flagellar assembly factor FliW	View
5DMD	B	141	Flagellar assembly factor FliW	View
5IXG	A	168	YceI	View
5IXG	B	169	YceI	View
5IXG	C	169	YceI	View
5IXG	D	169	YceI	View
5IXH	B	161	YceI-like domain protein	View
1DUN	A	120	Pol polyprotein	View
1F7D	A	118	Pol polyprotein	View
1W4S	A	146	Protein polybromo-1	View
1Y0G	A	169	Protein YceI	View
2AJ7	A	155	Flagellar assembly factor FliW	View
2BM3	A	162	Scaffolding dockerin binding protein A	View
2CO3	A	135	Putative outer membrane protein	View
2OL1	A	124	DUTP pyrophosphatase	View

Topology view of query protein [ProLego results]

3ARA : A

Topology Information