Protein Detail

Protein Information

PDBId & Chain	5BXD : D
Molecule	BTB/POZ domain-containing protein KCTD1
Residues	107
Sequence
SSE Sequence^*(8)	`EEHHEHHH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ca.Ha.Ca.0.Hr.Ha-Cp.0.0.0.0.Hr-Ca.0.Hr.0.0-Ep.Cp.0.0-Ca.0.0-0.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 5BXD_D

Protein Id: 5BXD_D

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 5BXD_D

Protein Id: 5BXD_D

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,
3	EHH	0.Hr-0	False	3V9R:B, 3VIQ:B, 4F9K:A, 4GHJ:B, 4HDD:A, 4TSH:A, 4Z8E:A, 4Z8E:B, 4Z8E:C, 5LUT:C, 5LUT:E, 1NGM:B, 4YC5:A, 4ZN8:A, 5VC9:C, 5X42:B,	d1kbha_, d1p94a_, 1kbhA00, 1ngmB00, 1ngmJ00, 1p94A00,
3	HHH	Hr.Ha-Hr	True	3AJF:C, 3AJF:D, 3CX5:F, 3CX5:Q, 3PH0:B, 4D6K:F, 4MZZ:A, 4MZZ:B, 1CXZ:B, 1ZEI:A, 2GSV:A, 2NN4:A, 2OXL:A, 2UWJ:E,	d1cxzb_, d1fafa_, d1vq8v1, d2dt7b1, d2elca1, d2gsva1, d2nn4a1, d3cx5f1, 1cxzB00, 1cxzB00, 1fafA00, 1qzpA00, 1trlA00, 1vq8V00, 2nn4A00, 3cx5F00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3DRZ	A	103	BTB/POZ domain-containing protein KCTD5	View
3DRZ	B	103	BTB/POZ domain-containing protein KCTD5	View
3KLU	A	118	Uncharacterized protein YqbN	View
4CRH	A	94	SH3KBP1-binding protein 1	View
4UIJ	A	104	BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1	View
4UIJ	B	103	BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1	View
5A15	A	95	BTB/POZ domain-containing protein KCTD16	View
5A15	B	95	BTB/POZ domain-containing protein KCTD16	View
5A15	C	95	BTB/POZ domain-containing protein KCTD16	View
5A15	D	95	BTB/POZ domain-containing protein KCTD16	View
5A15	E	95	BTB/POZ domain-containing protein KCTD16	View
5A15	F	95	BTB/POZ domain-containing protein KCTD16	View
5A15	G	95	BTB/POZ domain-containing protein KCTD16	View
5A15	H	95	BTB/POZ domain-containing protein KCTD16	View
5A15	I	95	BTB/POZ domain-containing protein KCTD16	View
5A15	J	95	BTB/POZ domain-containing protein KCTD16	View
5A15	K	95	BTB/POZ domain-containing protein KCTD16	View
5A15	L	95	BTB/POZ domain-containing protein KCTD16	View
5A15	M	95	BTB/POZ domain-containing protein KCTD16	View
5A15	N	95	BTB/POZ domain-containing protein KCTD16	View
5A15	O	95	BTB/POZ domain-containing protein KCTD16	View
5A6R	A	102	BTB/POZ domain-containing protein KCTD17	View
5A6R	B	101	BTB/POZ domain-containing protein KCTD17	View
5A6R	C	102	BTB/POZ domain-containing protein KCTD17	View
5A6R	D	101	BTB/POZ domain-containing protein KCTD17	View
5A6R	E	101	BTB/POZ domain-containing protein KCTD17	View
5BXH	B	99	BTB/POZ domain-containing protein KCTD9	View
5BXH	C	99	BTB/POZ domain-containing protein KCTD9	View
5BXH	D	100	BTB/POZ domain-containing protein KCTD9	View
5BXH	E	97	BTB/POZ domain-containing protein KCTD9	View
5FTA	B	101	BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3	View
5FTA	C	97	BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3	View
5FTA	D	99	BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3	View
2VKP	A	99	BTB/POZ domain-containing protein 6	View

Topology view of query protein [ProLego results]

5BXD : D

Topology Information