Protein Detail

Protein Information

PDBId & Chain	5AKO : C
Molecule	Uncharacterized protein
Residues	153
Sequence
SSE Sequence^*(7)	`EEEEEEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.Ea.0.0.Ea.Ca-0.Ea.0.0.Cp-0.0.Ea.Cp-Ea.0.0-0.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 5AKO_C

Protein Id: 5AKO_C

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 5AKO_C

Protein Id: 5AKO_C

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEE	Ea.0-Ea	False	4C2M:1, 4C2M:L, 4KSN:A, 4SGB:I, 6RXN:A, 2DSX:A, 2RDV:A, 2V3B:B,	d1lkoa2, d1pfva3, d1yuza2, d1zina2, d2cona1, d4sgbi_, 2dsxA00, 4sgbI00,
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,
4	EEEE	0.Ea.0-0.Ea-0	False	3EB5:A, 4AUQ:B, 4AUQ:E,
4	EEEE	Ea.0.0-Ea.0-0	False	3U28:B, 2AUS:B,	d3u28b_,
4	EEEE	0.0.Ea-0.0-Ea	False	1KVE:B,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
5AKO	D	153	Uncharacterized protein	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2Z14	A	116	EF-hand domain-containing family member C2	View
2Z1C	C	71	Hydrogenase expression/formation protein HypC	View
2Z3Q	D	77	Interleukin-15 receptor subunit alpha	View
3E9F	A	99	Chromatin modification-related protein EAF3	View
3KDF	A	110	Replication protein A 14 kDa subunit	View
3KDF	C	113	Replication protein A 14 kDa subunit	View
3KF6	B	105	Protein ten1	View
3M1I	B	131	Ran-specific GTPase-activating protein 1	View
3NPP	A	86	Uncharacterized protein YxeA	View
3NPP	B	86	Uncharacterized protein YxeA	View
3NSW	G	94	Excretory-secretory protein 2	View
3TWI	D	168	Variable lymphocyte receptor B	View
3TWI	E	166	Variable lymphocyte receptor B	View
3TWI	F	117	Variable lymphocyte receptor B	View
3ULB	A	102	Target of rapamycin complex 2 subunit AVO1	View
3ULB	B	97	Target of rapamycin complex 2 subunit AVO1	View
3VNN	A	124	DNA ligase 4	View
4EMO	A	102	Sharpin	View
4EMO	B	98	Sharpin	View
4EMO	D	103	Sharpin	View
4HAT	B	121	Ran-specific GTPase-activating protein 1	View
4HN7	A	85	Signal transduction protein PmrD	View
4I86	B	98	Cellulose synthase 1	View
4KHB	A	113	Putative uncharacterized protein	View
4KHB	C	106	Putative uncharacterized protein	View
4KHB	E	106	Putative uncharacterized protein	View
4KHB	G	106	Putative uncharacterized protein	View
4RT1	A	108	Mannuronan synthase	View
4RT1	B	108	Mannuronan synthase	View
4RT1	C	108	Mannuronan synthase	View
5DOI	E	93	Telomerase associated protein p45	View
5DOI	F	93	Telomerase associated protein p45	View
5DOI	G	93	Telomerase associated protein p45	View
5DOI	H	93	Telomerase associated protein p45	View
5IRO	H	103	E3 19 kDa protein	View
5IRO	L	103	E3 19 kDa protein	View
5IRO	P	103	E3 19 kDa protein	View
5IRO	T	103	E3 19 kDa protein	View
5IRO	X	103	E3 19 kDa protein	View
1K5D	B	146	Ran-specific GTPase-activating protein	View
1V76	A	92	Ribonuclease P protein component 1	View
2DTC	A	114	Ras-specific guanine nucleotide-releasing factor RalGPS1	View
2IA9	A	91	Putative septation protein SpoVG	View
2IYB	E	64	Testin	View

Topology view of query protein [ProLego results]

5AKO : C

Topology Information