Protein Detail

Protein Information

PDBId & Chain	3AI3 : C
Molecule	NADPH-sorbose reductase
Residues	263
Sequence
SSE Sequence^*(16)	`EHEHEHEHHEHEHHHE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ca.Ca.Ca.Ca.0.0.0.Ca.Ca.Ca.0.Hr.0.Ca-Ep.Hp.Ep.0.0.0.Ca.0.Hp.Ep.0.0.0.0-0.0.Ca.0.0.Hp.Ep.Hr.Ca.0.0.Ca.0-0.0.0.0.0.0.0.0.0.0.0.Ep-Ca.Ca.0.0.0.0.0.0.0.Ca.Ca-Ep.0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0.0-Ca.0.0.0.0.0.0.0-0.0.0.0.0.0.0-0.0.0.0.0.0-0.0.0.0.0-0.0.0.0-0.Hr.0-0.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3AI3_C

Protein Id: 3AI3_C

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3AI3_C

Protein Id: 3AI3_C

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EHE	Ca.Ca-Ep	True	2X4K:B, 3EJ9:B, 3EJ9:D, 3EJ9:F, 3MB2:B, 3MB2:D, 3MB2:F, 3MB2:H, 3MB2:J, 3MB2:L, 4X1C:B, 2PJR:B,	d3ej9b_,
3	EHH	0.Hr-0	False	3V9R:B, 3VIQ:B, 4F9K:A, 4GHJ:B, 4HDD:A, 4TSH:A, 4Z8E:A, 4Z8E:B, 4Z8E:C, 5LUT:C, 5LUT:E, 1NGM:B, 4YC5:A, 4ZN8:A, 5VC9:C, 5X42:B,	d1kbha_, d1p94a_, 1kbhA00, 1ngmB00, 1ngmJ00, 1p94A00,
3	HHH	Hr.0-0	True	2ZXX:D, 2ZXX:E, 3H87:D, 3KXE:C, 3KXE:D, 3PN7:D, 4FXE:A, 4FXE:B, 4J2N:B, 4J2N:D, 4QIC:B, 4QIC:D, 4Z8L:C, 5CEG:A, 5CEG:C, 1HWT:C, 1OV9:A, 1T0F:C, 1ZX3:A, 2BSQ:E, 2ER8:A, 5VJI:C, 5WWO:C, 5X3T:A,	d1ov9a_, d1y9ba1, d2bska1, d2bsqe1, 1bpeA01, 1bpeA01, 1uklC00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3AI3	A	263	NADPH-sorbose reductase	View
3AI3	E	263	NADPH-sorbose reductase	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2ZAT	A	251	Dehydrogenase/reductase SDR family member 4	View
2ZAT	D	251	Dehydrogenase/reductase SDR family member 4	View
3A28	A	257	L-2,3-butanediol dehydrogenase	View
3A28	B	257	L-2,3-butanediol dehydrogenase	View
3A28	C	257	L-2,3-butanediol dehydrogenase	View
3A28	D	257	L-2,3-butanediol dehydrogenase	View
3A28	E	257	L-2,3-butanediol dehydrogenase	View
3A28	F	257	L-2,3-butanediol dehydrogenase	View
3A28	H	257	L-2,3-butanediol dehydrogenase	View
3AI3	G	263	NADPH-sorbose reductase	View
3AWD	A	257	Putative polyol dehydrogenase	View
3AWD	B	257	Putative polyol dehydrogenase	View
3AWD	C	257	Putative polyol dehydrogenase	View
3AWD	D	257	Putative polyol dehydrogenase	View
3AY7	A	260	Glucose 1-dehydrogenase 4	View
3AY7	B	259	Glucose 1-dehydrogenase 4	View
3D3W	A	243	L-xylulose reductase	View
3D3W	B	244	L-xylulose reductase	View
3EZL	A	243	Acetoacetyl-CoA reductase	View
3GAF	A	249	Short-chain dehydrogenase/reductase SDR	View
3GRP	A	231	3-oxoacyl-(Acyl carrierprotein) reductase	View
3GVC	A	245	Probable short-chain type dehydrogenase/reductase	View
3GVC	B	255	Probable short-chain type dehydrogenase/reductase	View
3GVC	C	250	Probable short-chain type dehydrogenase/reductase	View
3GVC	D	249	Probable short-chain type dehydrogenase/reductase	View
3IS3	A	260	17beta-hydroxysteroid dehydrogenase	View
3PK0	A	260	Short-chain dehydrogenase/reductase SDR	View
3PK0	B	262	Short-chain dehydrogenase/reductase SDR	View
3PK0	C	262	Short-chain dehydrogenase/reductase SDR	View
3PK0	D	259	Short-chain dehydrogenase/reductase SDR	View
3PPI	A	258	3-hydroxyacyl-CoA dehydrogenase type-2	View
3RIH	C	259	Uncharacterized protein	View
3S55	A	269	Putative short-chain dehydrogenase/reductase	View
3S55	B	270	Putative short-chain dehydrogenase/reductase	View
3S55	C	269	Putative short-chain dehydrogenase/reductase	View
3S55	D	275	Putative short-chain dehydrogenase/reductase	View
3S55	E	266	Putative short-chain dehydrogenase/reductase	View
3S55	F	275	Putative short-chain dehydrogenase/reductase	View
3S55	G	269	Putative short-chain dehydrogenase/reductase	View
3S55	H	271	Putative short-chain dehydrogenase/reductase	View
3SX2	D	269	Uncharacterized protein	View
3SX2	F	274	Uncharacterized protein	View
3T7C	A	278	Carveol dehydrogenase	View
3T7C	B	277	Carveol dehydrogenase	View
3T7C	C	278	Carveol dehydrogenase	View
3T7C	D	272	Carveol dehydrogenase	View
3UF0	A	249	Short-chain dehydrogenase/reductase SDR	View
3UF0	B	249	Short-chain dehydrogenase/reductase SDR	View
3UVE	A	281	Carveol dehydrogenase ((+)-trans-carveol dehydrogenase)	View
3UVE	B	281	Carveol dehydrogenase ((+)-trans-carveol dehydrogenase)	View
3UVE	C	281	Carveol dehydrogenase ((+)-trans-carveol dehydrogenase)	View
3UVE	D	281	Carveol dehydrogenase ((+)-trans-carveol dehydrogenase)	View
3WDS	A	257	NADH-dependent quinuclidinone reductase	View
3WDS	B	257	NADH-dependent quinuclidinone reductase	View
3WDS	C	257	NADH-dependent quinuclidinone reductase	View
3WDS	D	257	NADH-dependent quinuclidinone reductase	View
3WTC	A	259	Putative oxidoreductase	View
3WTC	B	259	Putative oxidoreductase	View
3WYE	A	255	Diacetyl reductase [(S)-acetoin forming]	View
4E6P	A	250	Probable sorbitol dehydrogenase (L-iditol 2-dehydrogenase)	View
4E6P	B	250	Probable sorbitol dehydrogenase (L-iditol 2-dehydrogenase)	View
4E6P	C	250	Probable sorbitol dehydrogenase (L-iditol 2-dehydrogenase)	View
4E6P	D	250	Probable sorbitol dehydrogenase (L-iditol 2-dehydrogenase)	View
4EGF	A	257	L-xylulose reductase	View
4EGF	B	257	L-xylulose reductase	View
4EGF	C	257	L-xylulose reductase	View
4EGF	D	253	L-xylulose reductase	View
4EGF	E	257	L-xylulose reductase	View
4EGF	G	255	L-xylulose reductase	View
4EGF	H	257	L-xylulose reductase	View
4G81	A	253	Putative hexonate dehydrogenase	View
4G81	B	253	Putative hexonate dehydrogenase	View
4G81	C	253	Putative hexonate dehydrogenase	View
4G81	D	253	Putative hexonate dehydrogenase	View
4IBO	A	254	Gluconate dehydrogenase	View
4IBO	B	253	Gluconate dehydrogenase	View
4IBO	C	253	Gluconate dehydrogenase	View
4IBO	D	256	Gluconate dehydrogenase	View
4ITU	A	253	Short-chain dehydrogenase/reductase SDR	View
4ITU	B	250	Short-chain dehydrogenase/reductase SDR	View
4ITU	C	246	Short-chain dehydrogenase/reductase SDR	View
4ITU	D	249	Short-chain dehydrogenase/reductase SDR	View
4IY1	A	249	Halohydrin dehalogenase	View
4IY1	B	250	Halohydrin dehalogenase	View
4KWH	B	257	Reductase homolog	View
4NK4	A	258	Enoyl-[acyl-carrier-protein] reductase [NADH]	View
4NK4	B	258	Enoyl-[acyl-carrier-protein] reductase [NADH]	View
4NK4	C	258	Enoyl-[acyl-carrier-protein] reductase [NADH]	View
4NK4	D	258	Enoyl-[acyl-carrier-protein] reductase [NADH]	View
4NK4	E	258	Enoyl-[acyl-carrier-protein] reductase [NADH]	View
4NK4	F	257	Enoyl-[acyl-carrier-protein] reductase [NADH]	View
4NPC	A	251	Sorbitol dehydrogenase	View
4NPC	B	253	Sorbitol dehydrogenase	View
4QED	A	248	ElxO	View
4QED	B	248	ElxO	View
4RF5	A	251	NADPH dependent R-specific alcohol dehydrogenase	View
4RF5	B	251	NADPH dependent R-specific alcohol dehydrogenase	View
4TRO	A	268	Enoyl-[acyl-carrier-protein] reductase [NADH]	View
4TRR	A	256	Putative D-beta-hydroxybutyrate dehydrogenase	View
4TRR	B	260	Putative D-beta-hydroxybutyrate dehydrogenase	View
4TRR	C	256	Putative D-beta-hydroxybutyrate dehydrogenase	View
4TRR	D	256	Putative D-beta-hydroxybutyrate dehydrogenase	View
4TRR	F	254	Putative D-beta-hydroxybutyrate dehydrogenase	View
4TRR	H	256	Putative D-beta-hydroxybutyrate dehydrogenase	View
4URF	A	248	Cyclohexanol dehydrogenase	View
4URF	B	248	Cyclohexanol dehydrogenase	View
4WEC	A	258	Short-chain dehydrogenase/reductase SDR	View
4WEC	B	254	Short-chain dehydrogenase/reductase SDR	View
4WEC	C	253	Short-chain dehydrogenase/reductase SDR	View
4WEC	D	258	Short-chain dehydrogenase/reductase SDR	View
4WUV	B	277	2-hydroxycyclohexanecarboxyl-CoA dehydrogenase	View
4Z9F	A	243	Halohydrin epoxidase A	View
4Z9F	B	243	Halohydrin epoxidase A	View
4Z9F	C	244	Halohydrin epoxidase A	View
4Z9F	D	244	Halohydrin epoxidase A	View
4Z9F	E	243	Halohydrin epoxidase A	View
4Z9F	F	244	Halohydrin epoxidase A	View
4Z9F	G	244	Halohydrin epoxidase A	View
4Z9F	H	244	Halohydrin epoxidase A	View
4ZA2	A	253	2-deoxy-D-gluconate 3-dehydrogenase	View
5B4T	A	260	D-3-hydroxybutyrate dehydrogenase	View
5EJ2	A	277	Carveol dehydrogenase	View
5EJ2	B	277	Carveol dehydrogenase	View
5EJ2	C	277	Carveol dehydrogenase	View
5EJ2	D	277	Carveol dehydrogenase	View
5IDY	A	262	Short-chain dehydrogenase/reductase SDR	View
5IDY	B	264	Short-chain dehydrogenase/reductase SDR	View
5ITW	A	255	Dihydroanticapsin 7-dehydrogenase	View
5ITW	B	255	Dihydroanticapsin 7-dehydrogenase	View
5ITW	C	255	Dihydroanticapsin 7-dehydrogenase	View
5ITW	D	255	Dihydroanticapsin 7-dehydrogenase	View
5JC8	A	263	Putative short-chain dehydrogenase/reductase	View
5JC8	B	253	Putative short-chain dehydrogenase/reductase	View
5JC8	D	262	Putative short-chain dehydrogenase/reductase	View
5KVC	A	254	Halohydrin dehalogenase	View
5KVC	B	254	Halohydrin dehalogenase	View
5TF4	F	260	Enoyl-[acyl-carrier-protein] reductase [NADH]	View
5U9P	C	255	Gluconate 5-dehydrogenase	View
5UNL	B	262	3-ketoacyl-ACP reductase	View
5VA8	A	261	Short-chain dehydrogenase/reductase SDR	View
5VA8	B	261	Short-chain dehydrogenase/reductase SDR	View
5VA8	C	261	Short-chain dehydrogenase/reductase SDR	View
5VA8	D	261	Short-chain dehydrogenase/reductase SDR	View
1CYD	A	242	Carbonyl reductase [NADPH] 2	View
1FMC	A	255	7-alpha-hydroxysteroid dehydrogenase	View
1G0O	A	272	Tetrahydroxynaphthalene reductase	View
1GEE	A	261	Glucose 1-dehydrogenase	View
1GEG	A	255	Diacetyl reductase [(S)-acetoin forming]	View
1IY8	A	258	Levodione reductase	View
1JA9	A	259	Tetrahydroxynaphthalene reductase	View
1K2W	A	256	Sorbitol dehydrogenase	View
1O5I	A	234	3-oxoacyl-[acyl-carrier protein] reductase	View
1OAA	A	259	Sepiapterin reductase	View
1SPX	A	237	Uncharacterized protein	View
1VL8	A	251	Oxidoreductase, short chain dehydrogenase/reductase family	View
1ZK4	A	251	R-specific alcohol dehydrogenase	View
1ZMO	A	243	Halohydrin dehalogenase	View
1ZMT	A	252	Halohydrin dehalogenase	View
2B4Q	A	256	Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase	View
2CFC	A	250	2-(R)-hydroxypropyl-CoM dehydrogenase	View
2D1Y	A	240	Oxidoreductase, short-chain dehydrogenase/reductase family	View
2EKP	A	238	2-deoxy-D-gluconate 3-dehydrogenase	View
2HQ1	A	221	3-oxoacyl-(Acyl-carrier-protein) reductase	View
2NTV	A	268	Enoyl-[acyl-carrier-protein] reductase [NADH]	View
2Q2V	A	255	Beta-D-hydroxybutyrate dehydrogenase	View
2WSB	A	254	Galactitol dehydrogenase	View
5VPS	A	260	Short-chain dehydrogenase/reductase SDR	View

Topology view of query protein [ProLego results]

3AI3 : C

Topology Information