ProLego Protein as lego blocks ...
 

Topology view of query protein [ProLego results]

Protein Information
PDBId & Chain4YIF : D
MoleculeUncharacterized HTH-type transcriptional regulator Rv0880
Residues132
Sequence
SSE Sequence*(8) HHHHEEHH
* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]
Protein Topology 

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand]
0.Hr.Hr.Ca.Ea.Cp.0-0.Hr.0.0.0.0-0.Cp.Cp.0.0-0.Ca.0.0-0.Hr.0-Hr.0-Hr

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 4YIF_D
shapeImage
Protein Id: 4YIF_D

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 4YIF_D
shapeImage
Protein Id: 4YIF_D

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology
#SSE SSE string Contact String Preferrence  ProteinDB  DomainsDB
3 HHH 0.Hr-0 False 3V9R:B, 3VIQ:B, 4F9K:A, 4GHJ:B, 4HDD:A, 4TSH:A, 4Z8E:A, 4Z8E:B, 4Z8E:C, 5LUT:C, 5LUT:E, 1NGM:B, 4YC5:A, 4ZN8:A, 5VC9:C, 5X42:B, d1kbha_, d1p94a_, 1kbhA00, 1ngmB00, 1ngmJ00, 1p94A00,
3 HHH Hr.Hr-Hr True 2XVC:A, 3C57:B, 3E7L:A, 3E7L:C, 3E7L:D, 3FGH:A, 3I71:A, 3SJM:A, 3SJM:B, 3U2B:C, 4A3N:A, 4D6K:A, 4D6K:B, 4D6K:C, 4D6K:D, 4D6K:E, 4L5E:A, 4QR9:A, 4QR9:B, 4S2Q:D, 4X86:B, 4Y60:C, 5DUK:A, 5DUK:B, 5TW1:E, 1GUU:A, 1GVD:A, 1L0O:C, 1UJ8:A, 2CJJ:A, 2HDZ:A, 2OOA:A, d1a6qa1, d1efub3, d1fexa_, d1g2ha_, d1gv2a2, d1gvda_, d1hlva2, d1iioa_, d1irza_, d1iufa2, d1j3da_, d1k78a2, d1l0oc_, d1l6ja1, d1lbua1, d1m1eb_, d1ofcx1, d1qzea1, d1rp3a1, d1rq6a_, d1smyf1, d1ttea1, d1u78a2, d1uj8a1, d1uxca_, d1uzca_, d1veka_, d1w0ua_, d1wgxa_, d1wiva_, d1x58a1, d1xb2b1, d1xc5a1, d2cfxa1, d2cg4a1, d2cjja1, d2cosa1, d2cp8a1, d2cqra1, d2crga1, d2crna1, d2cyya1, d2daha1, d2diia1, d2dkla1, d2doda1, d2hdza_, d2lefa_, d2ve8a_, d4a3na_, 1bbyA00, 1bbyA00, 1dp3A00, 1efuB01, 1fexA00, 1g2hA00, 1gt0D00, 1gvdA00, 1hsmA00, 1ifyA00, 1iioA00, 1irzA00, 1iv6A00, 1k78I00, 1l0oC00, 1l8yA00, 1rq6A00, 1uxdA00, 1uzcA00, 1w0tA00, 1w0uA00, 1wivA00, 2lefA00,
3 HEE Ca.Ea-0 False 3K65:A, d1dwka2, d1h5oa_, 1h5oA00,
3 EEH Ea.Cp-0 False 5T59:C, 5T59:F, 5TDR:A, 2DS5:A, d2ds5a_,
4 HHHH 0.Hr.Hr-0.Hr-0 True 3X39:B, 4A69:D, 4IEJ:A, 5AUR:A, 5AUR:C, 5AUR:E, 5AUR:G, d1t95a1, d3bz6a2,
4 HHEE Hr.Ca.Ea-0.0-Cp False d2hoea1, 2hoeA01,
4 EEHH Ea.Cp.0-0.0-0 False 4CMZ:C,
5 HHHEE Hr.Hr.Ca.Ea-Hr.0.0-Cp.Cp-Ca False d1jhfa1,
Protein In ProLegoDB with identical/similar Topology