Protein Detail

Protein Information

PDBId & Chain	3KP7 : A
Molecule	Transcriptional regulator TcaR
Residues	140
Sequence
SSE Sequence^*(8)	`HHHHEEHH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.Hr.Hr.Cp.Ea.Cp.0-0.Hr.0.0.0.0-0.Cp.0.0.0-0.Ca.0.0-0.Hr.0-Hr.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3KP7_A

Protein Id: 3KP7_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3KP7_A

Protein Id: 3KP7_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HHH	0.Hr-0	False	3V9R:B, 3VIQ:B, 4F9K:A, 4GHJ:B, 4HDD:A, 4TSH:A, 4Z8E:A, 4Z8E:B, 4Z8E:C, 5LUT:C, 5LUT:E, 1NGM:B, 4YC5:A, 4ZN8:A, 5VC9:C, 5X42:B,	d1kbha_, d1p94a_, 1kbhA00, 1ngmB00, 1ngmJ00, 1p94A00,
3	HHH	Hr.Hr-Hr	True	2XVC:A, 3C57:B, 3E7L:A, 3E7L:C, 3E7L:D, 3FGH:A, 3I71:A, 3SJM:A, 3SJM:B, 3U2B:C, 4A3N:A, 4D6K:A, 4D6K:B, 4D6K:C, 4D6K:D, 4D6K:E, 4L5E:A, 4QR9:A, 4QR9:B, 4S2Q:D, 4X86:B, 4Y60:C, 5DUK:A, 5DUK:B, 5TW1:E, 1GUU:A, 1GVD:A, 1L0O:C, 1UJ8:A, 2CJJ:A, 2HDZ:A, 2OOA:A,	d1a6qa1, d1efub3, d1fexa_, d1g2ha_, d1gv2a2, d1gvda_, d1hlva2, d1iioa_, d1irza_, d1iufa2, d1j3da_, d1k78a2, d1l0oc_, d1l6ja1, d1lbua1, d1m1eb_, d1ofcx1, d1qzea1, d1rp3a1, d1rq6a_, d1smyf1, d1ttea1, d1u78a2, d1uj8a1, d1uxca_, d1uzca_, d1veka_, d1w0ua_, d1wgxa_, d1wiva_, d1x58a1, d1xb2b1, d1xc5a1, d2cfxa1, d2cg4a1, d2cjja1, d2cosa1, d2cp8a1, d2cqra1, d2crga1, d2crna1, d2cyya1, d2daha1, d2diia1, d2dkla1, d2doda1, d2hdza_, d2lefa_, d2ve8a_, d4a3na_, 1bbyA00, 1bbyA00, 1dp3A00, 1efuB01, 1fexA00, 1g2hA00, 1gt0D00, 1gvdA00, 1hsmA00, 1ifyA00, 1iioA00, 1irzA00, 1iv6A00, 1k78I00, 1l0oC00, 1l8yA00, 1rq6A00, 1uxdA00, 1uzcA00, 1w0tA00, 1w0uA00, 1wivA00, 2lefA00,
3	EEH	Ea.Cp-0	False	5T59:C, 5T59:F, 5TDR:A, 2DS5:A,	d2ds5a_,
4	HHHH	0.Hr.Hr-0.Hr-0	True	3X39:B, 4A69:D, 4IEJ:A, 5AUR:A, 5AUR:C, 5AUR:E, 5AUR:G,	d1t95a1, d3bz6a2,
4	EEHH	Ea.Cp.0-0.0-0	False	4CMZ:C,
5	HHHEE	Hr.Hr.Cp.Ea-Hr.0.0-Cp.0-Ca	False		d1ussa_,
6	HHHEEH	Hr.Hr.Cp.Ea.Cp-Hr.0.0.0-Cp.0.0-Ca.0-Hr	False		d1stza1,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YIU	E	206	Cytochrome c1	View
2YQY	A	127	Uncharacterized protein	View
3C9P	A	119	Putative uncharacterized protein	View
3DEU	B	130	Transcriptional regulator SlyA	View
3DKA	A	139	Uncharacterized protein YjoA	View
3DKA	B	141	Uncharacterized protein YjoA	View
3ECH	A	129	Multidrug resistance operon repressor	View
3HSR	B	133	MarR family regulatory protein	View
3KBY	A	138	Putative uncharacterized protein	View
3KBY	B	138	Putative uncharacterized protein	View
3KP7	B	142	Transcriptional regulator TcaR	View
3R9V	B	163	Invasin IpaD	View
3TGN	A	135	Transcriptional regulator AdcR	View
3TGN	B	146	Transcriptional regulator AdcR	View
4A5N	B	105	Uncharacterized HTH-type transcriptional regulator YybR	View
4AIK	A	139	Transcriptional regulator SlyA	View
4AIK	B	142	Transcriptional regulator SlyA	View
4G9Y	A	136	Putative transcriptional regulator	View
4GCV	A	140	Uncharacterized protein	View
4GCV	B	141	Uncharacterized protein	View
4GCV	C	136	Uncharacterized protein	View
4GCV	D	136	Uncharacterized protein	View
4GCV	E	137	Uncharacterized protein	View
4GCV	F	141	Uncharacterized protein	View
4GCV	G	136	Uncharacterized protein	View
4GCV	H	141	Uncharacterized protein	View
4GCV	I	136	Uncharacterized protein	View
4GCV	J	136	Uncharacterized protein	View
4GCV	K	141	Uncharacterized protein	View
4GCV	L	136	Uncharacterized protein	View
4L9N	A	137	Transcriptional regulator, MarR family	View
4L9N	B	138	Transcriptional regulator, MarR family	View
4YIF	B	141	Uncharacterized HTH-type transcriptional regulator Rv0880	View
4YIF	C	139	Uncharacterized HTH-type transcriptional regulator Rv0880	View
4YIF	D	132	Uncharacterized HTH-type transcriptional regulator Rv0880	View
4YIF	E	131	Uncharacterized HTH-type transcriptional regulator Rv0880	View
4YIF	F	130	Uncharacterized HTH-type transcriptional regulator Rv0880	View
4YK1	A	133	Uncharacterized protein	View
4YK3	A	120	Uncharacterized protein	View
5CYV	B	143	Transcriptional regulator	View
5FB2	A	138	Transcriptional regulator, MarR family	View
5FFX	B	138	Uncharacterized protein	View
5FFX	D	137	Uncharacterized protein	View
1JGS	A	138	Multiple antibiotic resistance protein MarR	View
1LRI	A	98	Beta-elicitin cryptogein	View
2F2E	A	140	Uncharacterized protein	View
2FA5	A	133	Transcriptional regulator marR/emrR family	View
2FBH	A	137	Probable transcriptional regulator	View
2GXG	A	140	Putative MarR family transcriptional regulator	View
2HR3	A	137	Probable transcriptional regulator	View
2NNN	A	133	Probable transcriptional regulator	View
2RDP	A	136	Putative transcriptional regulator MarR	View

Topology view of query protein [ProLego results]

3KP7 : A

Topology Information