ProLego Protein as lego blocks ...
 

Topology view of query protein [ProLego results]

Protein Information
PDBId & Chain4N72 : A
MoleculeAcetyltransferase component of pyruvate dehydrogenase complex
Residues246
Sequence
SSE Sequence*(17) HEHHEEEEEEHEEEEHH
* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]
Protein Topology 

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand]
Ca.Cp.Hr.0.Ea.0.0.Ea.0.Ca.0.Ep.0.Ea.Ca.Hr-0.0.0.0.0.0.0.0.0.0.0.0.Ea.0.0-0.0.0.Ca.0.0.Ea.Cp.0.0.0.0.Cp.0-0.0.0.0.0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.Ep.0.0.0.0.0-0.0.0.0.0.0.0.0.0.0.0-0.0.0.Hr.0.0.0.0.0.0-0.0.0.Ca.0.0.0.0.0-0.0.0.Ca.0.0.0.0-0.0.0.0.0.0.0-0.0.0.0.0.0-0.0.Ca.Hr.0-0.Ea.0.Hr-0.Cp.Hr-0.0-0

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 4N72_A
shapeImage
Protein Id: 4N72_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 4N72_A
shapeImage
Protein Id: 4N72_A

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology
#SSE SSE string Contact String Preferrence  ProteinDB  DomainsDB
3 HHE Hr.0-0 True 2ZXX:D, 2ZXX:E, 3H87:D, 3KXE:C, 3KXE:D, 3PN7:D, 4FXE:A, 4FXE:B, 4J2N:B, 4J2N:D, 4QIC:B, 4QIC:D, 4Z8L:C, 5CEG:A, 5CEG:C, 1HWT:C, 1OV9:A, 1T0F:C, 1ZX3:A, 2BSQ:E, 2ER8:A, 5VJI:C, 5WWO:C, 5X3T:A, d1ov9a_, d1y9ba1, d2bska1, d2bsqe1, 1bpeA01, 1bpeA01, 1uklC00,
3 HEE 0.Ea-0 True 2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A, d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3 EEE Ea.0-0 True 2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A, d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
3 HEE 0.Ep-0 False d1h6wa1,
3 EEE 0.Ea-Ea False 3QTE:A, 3QTE:B, 3QTE:C, 5J4S:B, 2J5L:A, d1bdsa_, d1ut3a_, d2j4wd1, d2nn6i2, 1bdsA00, 1bdsA00,
3 EEH Ea.Ca-0 True 3OW2:T, 1VQO:U, 2PUY:A, d1vq8u1, d1we9a_, d1wjva1, d2puya_, 1vq8U00,
4 HHEE Hr.0.Ea-0.0-0 False 1NL1:A,
4 EEEE Ea.0.0-0.0-0 True 1L2W:I, 1RGV:A, 1WZ3:A, 2FGO:A, 4BL0:B, d1l2wi_, d1wz3a1, d2fgoa_,
4 EEEE 0.0.Ea-0.0-0 True 3ZIA:I, 3ZIA:S, 5LSL:E, 5LSL:G, 5LSL:H, 2DSR:G, d2dsrg1,
4 EEEE 0.Ea.0-0.0-Ea False d1jhna3, d1nlta3, 1y8eB04,
4 HEEE 0.Ep.0-0.0-0 False d2qaml1,
4 EEHH Ea.Ca.Hr-0.0-0 False
5 EEEEE Ea.0.0.Ea-0.0.0-0.0-0 True 3O27:A, 1MVF:D, d1mvfd_, 1mvfD00,
6 EEEEEE Ea.0.0.Ea.0-0.0.0.0-0.0.Ea-0.0-0 False 3UA0:B, d1sdda2, d2j01v1,
16 HEHHEEEEEEHEEEEH Ca.Cp.Hr.0.Ea.0.0.Ea.0.Ca.0.Ep.0.Ea.Ca-0.0.0.0.0.0.0.0.0.0.0.0.Ea.0-0.0.0.Ca.0.0.Ea.Cp.0.0.0.0.Cp-0.0.0.0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.Ep.0.0.0.0-0.0.0.0.0.0.0.0.0.0-0.0.0.Hr.0.0.0.0.0-0.0.0.Ca.0.0.0.0-0.0.0.Ca.0.0.0-0.0.0.0.0.0-0.0.0.0.0-0.0.Ca.Hr-0.Ea.0-0.Cp-0 False 4N72:B, 4N72:C,
Protein In ProLegoDB with identical/similar Topology