Protein Detail

Protein Information

PDBId & Chain	2YD6 : A
Molecule	Receptor-type tyrosine-protein phosphatase delta
Residues	195
Sequence
SSE Sequence^*(19)	`EEEEEEEEEEEEEEEEEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.Ea.Ea.Ea.0.Ea.Ea.Ea.0.0.Ea.Ea.Ea.0.Ea.Ea.Ea.0-Ea.0.0.0.0.0.0.0.0.Ea.0.0.Ea.0.0.0.Ea-0.0.Ep.Ep.0.0.0.0.0.0.0.0.Ep.0.0.0-0.0.Ea.Ea.0.0.0.0.0.0.0.Ea.Ea.0.0-0.0.Ep.0.0.0.0.0.0.0.0.Ep.0.0-0.0.Ea.0.0.0.0.0.0.0.0.0.0-Ea.Ep.0.0.0.0.Ea.0.0.Ea.0.Ea-Ep.0.0.0.0.Ep.0.0.0.Ep.Ep-0.0.0.0.0.0.0.0.0.0-0.0.Ep.0.0.0.0.0.0-0.0.0.0.0.0.0.0-0.0.0.0.0.0.0-0.0.0.0.0.0-0.0.0.0.0-0.0.Ea.0-0.Ep.0-0.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 2YD6_A

Protein Id: 2YD6_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 2YD6_A

Protein Id: 2YD6_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	0.Ea-Ea	False	3QTE:A, 3QTE:B, 3QTE:C, 5J4S:B, 2J5L:A,	d1bdsa_, d1ut3a_, d2j4wd1, d2nn6i2, 1bdsA00, 1bdsA00,
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEE	Ea.0-0	True	2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A,	d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
3	EEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEE	Ea.0-Ea	False	4C2M:1, 4C2M:L, 4KSN:A, 4SGB:I, 6RXN:A, 2DSX:A, 2RDV:A, 2V3B:B,	d1lkoa2, d1pfva3, d1yuza2, d1zina2, d2cona1, d4sgbi_, 2dsxA00, 4sgbI00,
4	EEEE	Ea.Ea.Ea-0.0-0	True	4A94:D, 5JB9:E, 1XDT:R,	d1autl1, d1auua_, d1eaic_, d1g1ta2, d1hx2a_, d1ijqa2, d1m7ja2, d1nzia2, d1szba2, d1tfia_, d1xdtr_, d2bz6l_, d2y5fl_, d3bpse1, 1auuA00, 1auuA00, 1eaiC00, 1hx2A00, 1moxD00, 1nziB02, 1ridA03, 1tfiA00, 1wj2A00, 2bz6L00,
4	EEEE	Ea.Ea.0-0.0-Ep	False		d1e2wa2,
4	EEEE	Ea.0.Ea-0.0-Ep	False		d1bmlc3,
4	EEEE	0.Ea.Ea-0.0-0	True	2YH9:A, 2YH9:B, 2YH9:C, 3OW2:Z, 3UL5:C, 4YX1:A, 4YX1:B, 5U6Z:A, 1VQO:1, 2QRD:B,	d1vq811, d2f1la1, d2qlvb2, 1vq8100, 2f1lA02,
4	EEEE	Ea.Ea.0-0.0-0	True	3IGM:A, 3IGM:B, 5DM6:F, 5FGO:A, 5FGO:C, 5FGO:E, 5FGO:F, 2WH7:A,	d1pd0a5,
4	EEEE	Ea.0.0-0.0-0	True	1L2W:I, 1RGV:A, 1WZ3:A, 2FGO:A, 4BL0:B,	d1l2wi_, d1wz3a1, d2fgoa_,
4	EEEE	Ea.0.Ea-Ea.0-Ep	False	2Y5P:A, 2Y5P:B, 2Y5P:C, 4OZC:A,
5	EEEEE	Ea.0.Ea.Ea-0.0.0-Ep.0-Ea	False	4MN5:A, 4MN5:B,
5	EEEEE	Ea.Ea.Ea.0-0.0.0-0.0-0	False	4JZE:L, 5PAX:A,	d2ct7a1, 1kliL00,
5	EEEEE	Ea.Ea.0.0-0.0.0-0.0-0	False	4U1E:G, 5DMB:D,
5	EEEEE	Ea.0.0.Ea-0.0.Ea-0.0-0	False	1PI2:A,
7	EEEEEEE	Ea.Ea.0.Ea.Ea.Ea-0.Ea.0.0.0-0.Ep.0.0-Ea.Ea.0-Ep.0-0	False	4X5L:A, 4X5L:B,
9	EEEEEEEEE	Ea.Ea.Ea.0.Ea.Ea.Ea.0-0.0.Ea.0.0.0.Ea-0.0.Ep.0.0.0-0.Ea.Ea.0.0-0.Ep.0.0-0.0.0-0.Ea-Ep	False	4UU9:B, 4UU9:L,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2XQY	G	211		View
2XWT	A	209		View
2XWT	C	234	Thyrotropin receptor	View
2YPV	H	215		View
2ZCH	H	220		View
3B9K	D	210		View
3B9K	H	210		View
3BGF	B	208	Anti-deoxynivalenol scFv lambda heavy chain variable region	View
3BGF	H	208	Anti-deoxynivalenol scFv lambda heavy chain variable region	View
3BQU	D	217	Ig heavy chain V region MOPC 104E	View
3EO0	B	220	Hepatitis B virus receptor binding protein	View
3EO0	D	220	Hepatitis B virus receptor binding protein	View
3FO9	B	212	Ig gamma-2A chain C region, membrane-bound form	View
3FO9	H	212	Ig gamma-2A chain C region, membrane-bound form	View
3KR3	H	218		View
3MJ6	A	227	Junctional adhesion molecule-like	View
3P0Y	H	210		View
3QEE	A	298	Beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43N	View
3QEE	B	299	Beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43N	View
3QQ2	C	249	BrkA autotransporter	View
3RKD	D	218		View
3RKD	H	218		View
3RVV	D	216		View
3RVW	D	218		View
3S35	H	211		View
3S7V	A	257	Major capsid protein VP1	View
3S7V	C	268	Major capsid protein VP1	View
3S7V	E	261	Major capsid protein VP1	View
3S7V	H	265	Major capsid protein VP1	View
3S7V	I	256	Major capsid protein VP1	View
3SY9	B	372	Histidine porin OpdC	View
3T3P	E	214		View
3T3P	H	216		View
3TJE	H	229		View
3TV0	B	141	Dynactin subunit 6	View
3U0W	H	206	Ig gamma-1 chain C region	View
3U2S	A	202		View
3U2S	H	205		View
3U4E	A	205		View
3UC0	H	215		View
3UC0	I	217		View
3V6O	C	220		View
3V6O	D	215		View
3WFD	H	225		View
3WIH	H	219		View
3WKM	H	216		View
3WKM	I	194		View
4AG4	A	341	Epithelial discoidin domain-containing receptor 1	View
4AG4	H	205		View
4CAD	B	221		View
4CAD	E	220		View
4CAD	H	221		View
4CAD	K	221		View
4D3C	H	210		View
4DTG	H	221		View
4E2Q	I	258	(S)-ureidoglycine aminohydrolase	View
4E2Q	K	258	(S)-ureidoglycine aminohydrolase	View
4E2Q	M	258	(S)-ureidoglycine aminohydrolase	View
4ENE	C	222		View
4ENE	E	221		View
4ERS	H	231		View
4F3F	B	219		View
4FCH	A	213	Outer membrane protein SusE	View
4FCH	B	213	Outer membrane protein SusE	View
4FFV	H	209		View
4FQI	H	207		View
4H88	H	218		View
4H8W	H	206		View
4HDI	B	219	Ig heavy chain Mem5	View
4HDI	H	220	Ig heavy chain Mem5	View
4HT1	H	210		View
4HWB	H	216		View
4I77	H	214		View
4IRZ	H	217		View
4J6R	H	213		View
4JZJ	A	214		View
4K3D	I	217		View
4K3J	H	215		View
4K4K	A	253	Uncharacterized protein	View
4K94	H	202		View
4KVC	H	220	Igh protein	View
4LIQ	H	212		View
4LSS	H	216		View
4LST	H	214		View
4LVN	C	216		View
4NJ9	H	209	Putative uncharacterized protein	View
4NP4	H	215		View
4NP4	I	221		View
4NUJ	B	214	Putative uncharacterized protein DKFZp686P15220	View
4O5L	H	215	cDNA FLJ78387	View
4PBV	C	195	Uncharacterized protein	View
4PBV	D	195	Uncharacterized protein	View
4PBV	E	194	Uncharacterized protein	View
4PCG	B	269	VP1	View
4PCH	E	263	VP1	View
4QWW	D	225		View
4QWW	F	219		View
4RDQ	G	211		View
4RDQ	I	211		View
4RDQ	K	211		View
4RDQ	M	211		View
4RDQ	O	211		View
4UUJ	A	219		View
4WFE	E	211		View
4WFE	G	210		View
4XL1	E	223	Delta-like protein	View
4XMP	H	212	Ig gamma-1 chain C region	View
4XNY	H	215	Ig gamma-1 chain C region	View
4YDV	B	207	IgG H chain	View
4YDV	H	207	IgG H chain	View
4YFC	A	209	Receptor-type tyrosine-protein phosphatase delta	View
4YXH	H	218		View
5A16	A	226	Fab4201 heavy chain	View
5A16	C	226	Fab4201 heavy chain	View
5A2F	A	218	CD166 antigen	View
5A9H	A	189	Solute carrier family 15 member 2	View
5B71	B	222		View
5B71	D	219		View
5BV7	H	222		View
5CZX	C	214		View
5CZX	H	215		View
5E5U	D	199	Contactin-6	View
5EO9	B	205	RE16159p	View
5EWI	H	210	Putative uncharacterized protein DKFZp686P15220	View
5F1S	A	206	Uncharacterized protein	View
5F3B	A	218		View
5F3B	E	217		View
5F9O	H	220		View
5FB8	B	223		View
5K9K	A	213		View
5K9K	H	211		View
5L0Q	C	213		View
5L0Q	F	214		View
5LQB	H	219		View
5MI0	B	221		View
5MZA	B	186	Intercellular adhesion molecule 1	View
5TE4	H	215		View
5TE7	H	216		View
5TIH	H	212		View
5TLK	D	211		View
5TLK	H	210		View
5TPW	H	211		View
5TQ0	H	212		View
5TRU	H	212		View
5V00	A	184	Uncharacterized protein	View
5V00	B	185	Uncharacterized protein	View
1A3R	H	207	Igh protein	View
1CIC	B	217	Ig gamma-2B chain C region	View
1CLZ	H	212	IGG FAB (IGG3, KAPPA)	View
1CT8	B	215	Ig gamma-1 chain C region secreted form	View
1EE6	A	197	Pectate lyase	View
1EJO	H	214	Igh protein	View
1EPF	A	189	Neural cell adhesion molecule 1	View
1F58	H	215	Igh protein	View
1FE8	H	210	Ig gamma-2A chain C region, A allele	View
1FNS	H	220	Ig gamma-1 chain C region secreted form	View
1FPT	H	213	Ig gamma-2A chain C region, membrane-bound form	View
1GIG	H	221	Igh protein	View
1JFQ	H	220	Ig heavy chain V region 36-65	View
1JGU	H	212	Ighg protein	View
1LK3	H	219	Ig gamma-1 chain C region	View
1LO0	H	218	Ig gamma-2A chain C region, membrane-bound form	View
1LO4	H	220	Ighg protein	View
1MNU	H	222	Ig gamma-2A chain C region, A allele	View
1NCW	H	216	Ig gamma-2A chain C region, membrane-bound form	View
1NKR	A	195	Killer cell immunoglobulin-like receptor 2DL1	View
1OVZ	A	193	Immunoglobulin alpha Fc receptor	View
1P7K	B	210	Ig gamma-1 chain C region secreted form	View
1PZ5	B	213	Ig heavy chain V-III region J606	View
1Q0X	H	209	Putative uncharacterized protein	View
1QFU	H	214	Ig gamma-1 chain C region, membrane-bound form	View
1R0A	H	225	Ig gamma-1 chain C region secreted form	View
1RHF	A	174	Tyrosine-protein kinase receptor TYRO3	View
1RIH	H	209	Ig gamma-1 chain C region secreted form	View
1RUR	H	212	Igh protein	View
1SBS	H	222		View
1SM3	H	205	Ig heavy chain V-III region J606	View
1T2Q	H	217	Ig heavy chain V region MC101	View
1T4K	B	213		View
1T66	D	220	Ighg protein	View
1UCT	A	191	Immunoglobulin alpha Fc receptor	View
1UWX	H	208		View
1YI9	A	295	Peptidyl-glycine alpha-amidating monooxygenase	View
1YJD	H	217		View
2C9A	A	256	Receptor-type tyrosine-protein phosphatase mu	View
2DQU	H	212	Ig heavy chain V region 914	View
2FAT	H	209		View
2FBJ	H	220	Ig heavy chain V region J539	View
2G2R	B	214	Ig heavy chain Mem5	View
2G5B	B	204		View
2G60	H	204	LOC367586 protein	View
2GSI	B	205	Igh protein	View
2HRP	H	214		View
2IH3	A	219		View
2ORB	H	205		View
2VOV	A	289	Surface-associated protein	View
2VXT	H	203		View
2W9D	H	215		View
2YMX	H	222		View
2ZKH	H	209		View
3CVI	H	213		View
3EOT	H	212		View
3NCJ	H	217		View
3R06	B	206		View
3S96	A	218		View
3VG9	C	224		View
3WII	H	220		View
3ZKM	C	216		View
4DVB	A	212		View
4EBQ	H	218		View
4HBC	H	210		View
4ISV	B	212		View
4ONF	H	212		View
4P3C	H	218		View
4PP1	D	213		View
4RGO	H	213		View
4U0R	B	221		View
4WCY	H	210		View
4ZTP	H	211		View
5CP3	H	212		View
5DRZ	B	215		View
5EOQ	H	217		View
5H2B	A	216		View
5I30	H	212		View
5I76	B	221		View
5MV3	L	220		View
5MYO	B	221		View
5N4J	H	209		View
5NIV	B	213		View

Topology view of query protein [ProLego results]

2YD6 : A

Topology Information