Protein Detail

Protein Information

PDBId & Chain	4BMJ : H
Molecule	Tax1-binding protein 1
Residues	64
Sequence
SSE Sequence^*(6)	`EEHEEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ca.0.Ea.Ca-Cp.0.0.Cp-0.0.0-0.0-0`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 4BMJ_H

Protein Id: 4BMJ_H

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 4BMJ_H

Protein Id: 4BMJ_H

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,
3	HEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
4	EEHE	Ea.Ca.0-Cp.0-0	True	4WXA:D, 4WXA:E, 5B3H:F, 4LAD:B,	d2ewla1,
4	HEEH	0.Ea.Ca-0.Cp-0	True	2YNY:A, 2YNY:C, 3UK3:C, 3UK3:D, 4BMJ:F, 4BMJ:G, 4F52:B, 4ISO:B, 5MQ4:B, 5MQ4:C, 5MQ4:D, 5MQ4:E, 5MQ4:F, 1ZR0:B,	d1vlia1, 1yuiA00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
4BMJ	A	62	Tax1-binding protein 1	View
4BMJ	B	62	Tax1-binding protein 1	View
4BMJ	C	66	Tax1-binding protein 1	View
4BMJ	D	58	Tax1-binding protein 1	View
4BMJ	E	60	Tax1-binding protein 1	View
4BMJ	I	63	Tax1-binding protein 1	View
4BMJ	J	64	Tax1-binding protein 1	View
4BMJ	K	61	Tax1-binding protein 1	View
4M9V	C	61	Zinc finger protein 57	View
4M9V	F	61	Zinc finger protein 57	View
5B3H	C	54	Zinc finger protein JACKDAW	View
1F2I	G	66	Early growth response protein 1	View
1UHA	A	82	Lectin-D2	View
d2csha1	--	53	u'Zinc finger and BTB domain-containing protein 43'	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YNY	B	104	Putative inner membrane protein	View
3ABF	A	64	4-oxalocrotonate tautomerase	View
3ABF	D	62	4-oxalocrotonate tautomerase	View
3M21	A	65	Probable tautomerase HP_0924	View
3M21	D	66	Probable tautomerase HP_0924	View
3M21	F	67	Probable tautomerase HP_0924	View
3VD6	C	96	Erythroid transcription factor	View
4FAZ	A	62	Tautomerase	View
4FAZ	B	62	Tautomerase	View
4FDX	B	64	Tautomerase	View
4HC9	A	105	Trans-acting T-cell-specific transcription factor GATA-3	View
4X1C	G	61	2-hydroxymuconate tautomerase	View
4X1C	H	62	2-hydroxymuconate tautomerase	View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
4C2M	K	101	DNA-directed RNA polymerases I and III subunit RPAC2	View
4C2M	Z	100	DNA-directed RNA polymerases I and III subunit RPAC2	View
4IAJ	A	74	Conserved domain protein	View
4IAJ	B	75	Conserved domain protein	View
4IAJ	C	73	Conserved domain protein	View
4IAJ	D	72	Conserved domain protein	View
4IAJ	E	71	Conserved domain protein	View
4IAJ	F	71	Conserved domain protein	View
4IAJ	G	71	Conserved domain protein	View
4IAJ	H	73	Conserved domain protein	View
4LOW	A	84	Uncharacterized protein	View
4LOW	B	79	Uncharacterized protein	View
4O66	A	67	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1	View
4O66	B	67	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1	View
4O66	C	70	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1	View
4O66	D	70	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1	View
4QJV	B	94	DNA-directed RNA polymerase subunit L	View
4QJV	D	88	DNA-directed RNA polymerase subunit L	View
4UP0	A	85	Pygopus homolog 2	View
5B79	A	118	Zinc finger protein ubi-d4	View
5I3L	A	112	Zinc finger protein DPF3	View
5I3L	B	114	Zinc finger protein DPF3	View
1TIF	A	76	Translation initiation factor IF-3	View
1USM	A	77	4a-hydroxytetrahydrobiopterin dehydratase	View
1XPP	A	99	DNA-directed RNA polymerase subunit L	View
1XXA	A	71	Arginine repressor	View
2PA8	L	92	DNA-directed RNA polymerase subunit L	View
2V94	A	93	30S ribosomal protein S24e	View

Topology view of query protein [ProLego results]

4BMJ : H

Topology Information