Protein Detail

Protein Information

PDBId & Chain	3P7J : A
Molecule	Heterochromatin protein 1
Residues	59
Sequence
SSE Sequence^*(5)	`EEEHH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ea.Ca.Hr-0.Cp.0-0.Ca-Cp`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3P7J_A

Protein Id: 3P7J_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3P7J_A

Protein Id: 3P7J_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,
4	EEEH	Ea.Ea.Ca-0.Cp-0	True	2NYZ:D,	d1bb8a_, d1bbga_, d1qk9a_, d2drpa1, d2j01s1, 1bbgA00, 1bbgA00, 1qk9A00, 1ub1A00,
4	EEHH	Ea.Ca.Hr-Cp.0-Ca	False	4E6K:H, 4P1M:B,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3P7J	B	61	Heterochromatin protein 1	View
5T1I	B	68	Chromobox protein homolog 3	View
1E0B	A	61	Chromatin-associated protein swi6	View
d1e0ba_	--	61	u'Chromatin-associated protein swi6'	View
1e0bA00	--	61	Chromatin-associated protein swi6	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
5T1I	A	68	Chromobox protein homolog 3	View
2FMM	A	68	Chromobox protein homolog 1	View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3D2N	A	76	Muscleblind-like protein 1	View
3I3C	A	57	Chromobox protein homolog 5	View
3I3C	B	58	Chromobox protein homolog 5	View
3I3C	C	57	Chromobox protein homolog 5	View
3I3C	D	57	Chromobox protein homolog 5	View
3LWE	A	61	M-phase phosphoprotein 8	View
3LWE	B	59	M-phase phosphoprotein 8	View
3ODC	B	100	Poly [ADP-ribose] polymerase 1	View
3PES	A	81	Putative uncharacterized protein gp49	View
3PES	B	80	Putative uncharacterized protein gp49	View
4LID	A	86	Uncharacterized protein A-100	View
4LID	B	86	Uncharacterized protein A-100	View
4U1E	G	89	Eukaryotic translation initiation factor 3 subunit G	View
5DMB	D	72	Carbon storage regulator homolog	View
5TW1	J	83	RNA polymerase-binding protein RbpA	View
2D7E	A	105	Primosomal protein N'	View
2JDI	H	88	ATP synthase subunit delta, mitochondrial	View
2PST	X	61	Uncharacterized protein	View

Topology view of query protein [ProLego results]

3P7J : A

Topology Information