Protein Detail

Protein Information

PDBId & Chain	3P19 : C
Molecule	Putative blue fluorescent protein
Residues	218
Sequence
SSE Sequence^*(14)	`EHEHEHEHHEHEHE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ca.Ca.Ca.Ca.Ca.0.0.Ca.Ca.Ca.Ca.Ca-Ep.Hr.Ep.0.0.0.Ca.0.Hp.Ep.0.Ep-0.0.Ca.0.0.Hp.Ep.Hp.0.Ca.0-0.0.0.0.0.0.0.0.0.0-Ca.Ca.0.0.0.0.0.0.0-Ep.0.0.0.0.0.Ca.0-0.0.0.0.0.0.0-0.Ca.0.0.0.0-0.0.0.0.0-0.0.0.0-0.Hr.0-0.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3P19_C

Protein Id: 3P19_C

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3P19_C

Protein Id: 3P19_C

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EHE	Ca.Ca-Ep	True	2X4K:B, 3EJ9:B, 3EJ9:D, 3EJ9:F, 3MB2:B, 3MB2:D, 3MB2:F, 3MB2:H, 3MB2:J, 3MB2:L, 4X1C:B, 2PJR:B,	d3ej9b_,
10	EHEHEHEHHE	Ca.Ca.Ca.Ca.Ca.Ca.0.0.Ca-Ep.Hr.Ep.0.0.0.Ca.0-0.0.Ca.0.0.Hp.Ep-0.0.0.0.0.0-Ca.Ca.0.0.0-Ep.0.0.0-0.0.0-0.Ca-0	False	5AHW:B, 5AHW:E, 5AHW:F,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3E9N	A	189	Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases)	View
3E9N	H	181	Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases)	View
3GEM	A	213	Oxidoreductase, short chain dehydrogenase/reductase family	View
3GEM	B	217	Oxidoreductase, short chain dehydrogenase/reductase family	View
3GEM	D	210	Oxidoreductase, short chain dehydrogenase/reductase family	View
3GRP	B	219	3-oxoacyl-(Acyl carrierprotein) reductase	View
3GRP	C	213	3-oxoacyl-(Acyl carrierprotein) reductase	View
3GRP	D	209	3-oxoacyl-(Acyl carrierprotein) reductase	View
3GUY	B	204	Short-chain dehydrogenase/reductase SDR	View
3GUY	D	220	Short-chain dehydrogenase/reductase SDR	View
3GUY	G	228	Short-chain dehydrogenase/reductase SDR	View
3H7A	A	212	Possible short chain dehydrogenase	View
3H7A	B	213	Possible short chain dehydrogenase	View
3H7A	C	212	Possible short chain dehydrogenase	View
3H7A	D	212	Possible short chain dehydrogenase	View
3N74	A	227	DNA gyrase, subunit B:Short-chain dehydrogenase/reductase SDR:Glucose/ribitol dehydrogenase	View
3N74	B	227	DNA gyrase, subunit B:Short-chain dehydrogenase/reductase SDR:Glucose/ribitol dehydrogenase	View
3N74	C	235	DNA gyrase, subunit B:Short-chain dehydrogenase/reductase SDR:Glucose/ribitol dehydrogenase	View
3N74	D	227	DNA gyrase, subunit B:Short-chain dehydrogenase/reductase SDR:Glucose/ribitol dehydrogenase	View
3NYW	B	212	Putative oxidoreductase	View
3NYW	D	206	Putative oxidoreductase	View
3O38	A	244	Short-chain dehydrogenase/reductase SDR	View
3O38	B	240	Short-chain dehydrogenase/reductase SDR	View
3O38	C	241	Short-chain dehydrogenase/reductase SDR	View
3O38	D	244	Short-chain dehydrogenase/reductase SDR	View
3QIV	B	195	Uncharacterized protein	View
3RKR	A	221	Uncharacterized protein	View
3RKR	B	221	Uncharacterized protein	View
3RKR	C	224	Uncharacterized protein	View
3RKR	D	222	Uncharacterized protein	View
3TFO	A	216	Oxidoreductase	View
3TFO	B	215	Oxidoreductase	View
3TFO	C	216	Oxidoreductase	View
3TFO	D	218	Oxidoreductase	View
3WXB	B	252	Uncharacterized protein	View
4BMN	A	232	Alclohol dehydrogenase/short-chain dehydrogenase	View
4BMN	B	231	Alclohol dehydrogenase/short-chain dehydrogenase	View
4BMN	D	229	Alclohol dehydrogenase/short-chain dehydrogenase	View
4CQM	B	232	Carbonyl reductase family member 4	View
4DA9	A	215	Short-chain dehydrogenase/reductase	View
4DA9	B	214	Short-chain dehydrogenase/reductase	View
4DA9	C	216	Short-chain dehydrogenase/reductase	View
4DA9	D	216	Short-chain dehydrogenase/reductase	View
4FGS	B	226	Probable dehydrogenase protein	View
4NIM	A	240	Versicolorin reductase	View
4PCV	A	187	BdcA (YjgI)	View
4PCV	B	189	BdcA (YjgI)	View
4TRR	G	226	Putative D-beta-hydroxybutyrate dehydrogenase	View
4ZA2	C	239	2-deoxy-D-gluconate 3-dehydrogenase	View
5JO9	A	239	Ribitol 2-dehydrogenase	View
5UZX	A	231	Putative short-chain alcohol dehydrogenase	View
5UZX	B	231	Putative short-chain alcohol dehydrogenase	View
1NFF	A	244	3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase	View
1SNY	A	241	Sniffer, isoform B	View
2BD0	A	240	Sepiapterin reductase	View
2EW8	A	229	(S)-1-Phenylethanol dehydrogenase	View
2NWQ	A	225	Probable short-chain dehydrogenase	View

Topology view of query protein [ProLego results]

3P19 : C

Topology Information