Protein Detail

Protein Information

PDBId & Chain	3LFH : F
Molecule	Phosphotransferase system, mannose/fructose-specific component IIA
Residues	129
Sequence
SSE Sequence^*(9)	`EHEHEHEHH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ca.Ca.Ca.Ca.Ca.0.Ha-Ep.0.0.Hp.Ep.0.Cp-Ca.0.Ca.0.Ca.0-Ep.0.0.0.Cp-Ca.0.0.0-0.Hr.0-Ca.0-Cp`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3LFH_F

Protein Id: 3LFH_F

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3LFH_F

Protein Id: 3LFH_F

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EHE	Ca.Ca-Ep	True	2X4K:B, 3EJ9:B, 3EJ9:D, 3EJ9:F, 3MB2:B, 3MB2:D, 3MB2:F, 3MB2:H, 3MB2:J, 3MB2:L, 4X1C:B, 2PJR:B,	d3ej9b_,
4	EHEH	Ca.Ca.0-Ep.0-Ca	False	1GYX:A,	d1gyya_,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3LFH	A	129	Phosphotransferase system, mannose/fructose-specific component IIA	View
3LFH	C	134	Phosphotransferase system, mannose/fructose-specific component IIA	View
3LFH	D	128	Phosphotransferase system, mannose/fructose-specific component IIA	View
d3lfha_	--	129	u'Phosphotransferase system, mannose/fructose-specific component IIA'	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3CG0	A	126	Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor	View
3CG0	B	125	Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor	View
3CR3	C	117	PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM	View
3CR3	D	117	PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM	View
3CT6	A	130	PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM	View
3CT6	B	128	PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM	View
3ILX	B	136	First ORF in transposon ISC1904	View
3KYJ	B	129	CheY6 protein	View
3LHF	A	136	First ORF in transposon ISC1904	View
3LHF	B	136	First ORF in transposon ISC1904	View
3LHF	C	140	First ORF in transposon ISC1904	View
3LHK	B	142	Uncharacterized protein MJ0014	View
3LHK	C	142	Uncharacterized protein MJ0014	View
3ROF	A	158	Low molecular weight protein-tyrosine-phosphatase PtpA	View
4G0M	B	132	Protein argonaute 2	View
4G0X	A	142	Protein argonaute 1	View
4J07	A	152	6,7-dimethyl-8-ribityllumazine synthase	View
4J07	B	148	6,7-dimethyl-8-ribityllumazine synthase	View
4J07	C	149	6,7-dimethyl-8-ribityllumazine synthase	View
4J07	D	146	6,7-dimethyl-8-ribityllumazine synthase	View
4J07	E	148	6,7-dimethyl-8-ribityllumazine synthase	View
4KQ6	A	158	6,7-dimethyl-8-ribityllumazine synthase	View
4KQ6	B	158	6,7-dimethyl-8-ribityllumazine synthase	View
4KQ6	C	158	6,7-dimethyl-8-ribityllumazine synthase	View
4KQ6	D	165	6,7-dimethyl-8-ribityllumazine synthase	View
4KQ6	E	157	6,7-dimethyl-8-ribityllumazine synthase	View
4KQ6	F	157	6,7-dimethyl-8-ribityllumazine synthase	View
4KQ6	G	160	6,7-dimethyl-8-ribityllumazine synthase	View
4KQ6	H	158	6,7-dimethyl-8-ribityllumazine synthase	View
4KQ6	I	158	6,7-dimethyl-8-ribityllumazine synthase	View
4KQ6	J	157	6,7-dimethyl-8-ribityllumazine synthase	View
4MGE	A	108	PTS system, cellobiose-specific IIB component	View
4PIC	A	150	Protein-arginine-phosphatase	View
4PIC	B	150	Protein-arginine-phosphatase	View
4RA9	B	128	L-asparaginase	View
4TKZ	A	130	Uncharacterized protein	View
4TKZ	B	130	Uncharacterized protein	View
4TKZ	C	130	Uncharacterized protein	View
4TKZ	D	130	Uncharacterized protein	View
4TKZ	E	130	Uncharacterized protein	View
4TKZ	F	130	Uncharacterized protein	View
5T3U	B	133	PTS system, IIA component	View
1IIB	A	103	N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIB component	View
1PDO	A	129	PTS system mannose-specific EIIAB component	View
2B99	A	146	Riboflavin synthase	View
2I0F	A	147	6,7-dimethyl-8-ribityllumazine synthase 1	View
2JFB	A	153		View
2QSJ	A	120	DNA-binding response regulator, LuxR family	View

Topology view of query protein [ProLego results]

3LFH : F

Topology Information