Protein Detail

Protein Information

PDBId & Chain	3JXO : B
Molecule	TrkA-N domain protein
Residues	85
Sequence
SSE Sequence^*(6)	`EEEEEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.0.Ea.0.Ca-0.0.Ea.0-0.Ea.Cp-0.Cp-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3JXO_B

Protein Id: 3JXO_B

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3JXO_B

Protein Id: 3JXO_B

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	Ea.0-0	True	2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A,	d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
3	EEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEE	Ea.0-Ea	False	4C2M:1, 4C2M:L, 4KSN:A, 4SGB:I, 6RXN:A, 2DSX:A, 2RDV:A, 2V3B:B,	d1lkoa2, d1pfva3, d1yuza2, d1zina2, d2cona1, d4sgbi_, 2dsxA00, 4sgbI00,
4	EEEE	Ea.0.Ea-0.0-0	True	3BG4:D, 3UA0:A, 3UCI:A, 4R5R:A, 4R5R:B, 4ZRP:C, 4ZRP:D, 5B4Y:B, 5C13:A, 5C13:G, 5F0E:B, 5F86:B, 5JQP:B, 5KXH:B, 5KY0:B, 5KY4:B, 1J2L:A, 1KIG:L, 1LSL:A, 2QSK:A, 2W2N:E,	d1ataa_, d1b9wa2, d1i07a_, d1j2la_, d1jmab1, d1ppqa_, d1q4ga2, d2i9aa1, d2j01y1, d2qqra2, 1eqgA01, 1fycA00, 1i07A00, 1xkbA01, 2fd6A01,
5	EEEEE	Ea.0.Ea.0-0.0.Ea-0.Ea-0	False	2B8M:A,	d2b8ma1,
5	EEEEH	0.Ea.0.Ca-0.Ea.0-Ea.Cp-Cp	False	5F29:A, 5F29:B,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3JXO	A	84	TrkA-N domain protein	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2Z1C	A	71	Hydrogenase expression/formation protein HypC	View
2Z1C	B	74	Hydrogenase expression/formation protein HypC	View
3M9Q	A	89	Protein male-specific lethal-3	View
3M9Q	B	87	Protein male-specific lethal-3	View
3N8B	A	72	Uncharacterized protein	View
3OB9	A	89	Male-specific lethal 3 homolog	View
3OB9	B	87	Male-specific lethal 3 homolog	View
3OB9	C	88	Male-specific lethal 3 homolog	View
3OB9	D	93	Male-specific lethal 3 homolog	View
3OB9	E	79	Male-specific lethal 3 homolog	View
3TBM	A	61	Uncharacterized protein	View
3TBM	B	61	Uncharacterized protein	View
3TDQ	B	75	Uncharacterized protein	View
3X37	A	111	ZYRO0C14696p	View
4AGH	A	80	Uncharacterized protein	View
4BQD	A	78	Tissue factor pathway inhibitor	View
4CJ0	B	60		View
4CJ1	B	63	DNA-binding protein 7d	View
4CJ2	C	62	DNA-binding protein 7d	View
4CJ2	D	62	DNA-binding protein 7d	View
4ESR	A	65	Jouberin	View
4ESR	B	64	Jouberin	View
4HI8	B	72	LIM and senescent cell antigen-like-containing domain protein 1	View
4IGZ	A	76		View
4V3L	C	69	E3 ubiquitin-protein ligase RNF38	View
5FGO	B	62	Purine-rich binding protein-alpha, isoform E	View
5FGO	D	63	Purine-rich binding protein-alpha, isoform E	View
5FS4	A	118	Coat protein	View
5FS4	B	127	Coat protein	View
5IN1	A	71	Os11g0545600 protein	View
5IN1	B	71	Os11g0545600 protein	View
5UDZ	A	139	Protein lin-28 homolog A	View
1VBV	A	77	Heat shock protein HspQ	View
1XYI	A	66	DNA-binding protein 7d	View
2F5K	A	83	Mortality factor 4-like protein 1	View
2OQK	A	92	Uncharacterized protein	View
2PK7	A	63	UPF0434 protein PFL_1779	View
3OA6	A	84	Male-specific lethal 3 homolog	View
5UFQ	C	56		View
5VEI	A	80	Sorbin and SH3 domain-containing protein 2	View

Topology view of query protein [ProLego results]

3JXO : B

Topology Information