ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
ASTRAL-1.75B d3u2ua_ c.68.1.14 263 see topology u'Glycogenin-1' Homo sapiens
ASTRAL-1.75B d3u5la_ a.29.2.0 127 see topology u'Bromodomain-containing protein 4' Homo sapiens
ASTRAL-1.75B d3u5wa_ b.45.1.0 126 see topology u'Uncharacterized protein' Brucella abortus
ASTRAL-1.75B d3u7qa_ c.92.2.3 477 see topology u'Nitrogenase molybdenum-iron protein alpha chain' Azotobacter vinelandii
ASTRAL-1.75B d3u7qb_ c.92.2.3 522 see topology u'Nitrogenase molybdenum-iron protein beta chain' Azotobacter vinelandii
ASTRAL-1.75B d3u81a_ c.66.1.1 218 see topology u'Catechol O-methyltransferase' Rattus norvegicus
ASTRAL-1.75B d3u8ea_ d.3.1.0 216 see topology u'Papain-like Cysteine Protease' Crocus sativus
ASTRAL-1.75B d3u9qa_ a.123.1.1 257 see topology u'Peroxisome proliferator-activated receptor gamma' Homo sapiens
ASTRAL-1.75B d3ubya_ b.46.1.2 204 see topology u'DNA-3-methyladenine glycosylase' Homo sapiens
ASTRAL-1.75B d3ucxa_ c.2.1.0 258 see topology u'Short-chain dehydrogenase/reductase SDR' Mycobacterium smegmatis
ASTRAL-1.75B d3ue2a_ d.58.7.0 114 see topology u'Poly(U)-binding-splicing factor PUF60' Homo sapiens
ASTRAL-1.75B d3ugsa_ c.101.1.0 205 see topology u'Isoprenyl transferase' Campylobacter jejuni
ASTRAL-1.75B d3ui4a_ d.26.1.1 101 see topology u'Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4' Homo sapiens
ASTRAL-1.75B d3uida_ d.129.3.0 163 see topology u'Uncharacterized protein' Mycobacterium smegmatis
ASTRAL-1.75B d3ulla_ b.40.4.3 106 see topology u'Single-stranded DNA-binding protein, mitochondrial' Homo sapiens
ASTRAL-1.75B d3umha_ a.47.4.1 180 see topology u'Amyloid beta A4 protein' Homo sapiens
ASTRAL-1.75B d3up9a_ c.94.1.0 239 see topology u'Lipoprotein' Actinomyces odontolyticus
ASTRAL-1.75B d3urra_ d.112.1.0 152 see topology u'PTS IIA-like nitrogen-regulatory protein PtsN' Burkholderia thailandensis
ASTRAL-1.75B d3us4a_ d.93.1.1 94 see topology u'Megakaryocyte-associated tyrosine-protein kinase' Homo sapiens
ASTRAL-1.75B d3usya_ a.118.14.0 227 see topology u'Flagellar motor switch protein FliG' Helicobacter pylori
Table Description [Click here to expand]

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins