ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Molecule: [Protein molecule containing the word as query]
Source: [Source organism of protein ]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
ASTRAL-1.75B d3ljqa_ d.153.1.5 281 see topology u'N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase' Elizabethkingia meningoseptica
ASTRAL-1.75B d3ljsa_ c.72.1.0 303 see topology u'Fructokinase' Xylella fastidiosa
ASTRAL-1.75B d3lkfa_ f.6.1.1 292 see topology u'Gamma-hemolysin component B' Staphylococcus aureus
ASTRAL-1.75B d3llba_ d.145.1.0 81 see topology u'Uncharacterized protein' Pseudomonas aeruginosa
ASTRAL-1.75B d3lmba_ d.38.1.0 158 see topology
ASTRAL-1.75B d3lmea_ d.79.1.0 129 see topology u'Possible translation initiation inhibitor' Rhodopseudomonas palustris
ASTRAL-1.75B d3lmna_ d.324.1.1 132 see topology u'Ubiquitin carboxyl-terminal hydrolase 15' Homo sapiens
ASTRAL-1.75B d3lnla_ c.135.1.0 307 see topology u'GTP cyclohydrolase 1 type 2 homolog' Staphylococcus aureus
ASTRAL-1.75B d3lo3a_ d.58.4.0 93 see topology u'Uncharacterized protein' Colwellia psychrerythraea
ASTRAL-1.75B d3loca1 a.4.1.9 75 see topology u'HTH-type transcriptional regulator RutR' Escherichia coli
ASTRAL-1.75B d3loca2 a.121.1.1 122 see topology u'HTH-type transcriptional regulator RutR' Escherichia coli
ASTRAL-1.75B d3loga_ d.161.1.1 435 see topology u'Salicylate synthase' Mycobacterium tuberculosis
ASTRAL-1.75B d3loia_ b.82.1.0 161 see topology u'Putative uncharacterized protein' Branchiostoma belcheri
ASTRAL-1.75B d3lqna_ d.37.1.0 138 see topology u'Uncharacterized protein' Bacillus anthracis
ASTRAL-1.75B d3lqsa_ e.17.1.1 280 see topology u'D-alanine aminotransferase' Bacillus sp. YM-1
ASTRAL-1.75B d3lqva_ d.58.7.1 113 see topology u'Splicing factor 3B subunit 6' Homo sapiens
ASTRAL-1.75B d3lqya_ c.33.1.0 182 see topology u'Putative isochorismatase hydrolase' Oleispira antarctica
ASTRAL-1.75B d3lupa_ c.119.1.0 279 see topology u'DegV family protein' Streptococcus agalactiae
ASTRAL-1.75B d3lv0a_ e.7.1.0 258 see topology u'Extragenic suppressor protein suhB' Bartonella henselae
ASTRAL-1.75B d3lvjc_ d.68.3.3 77 see topology u'Sulfurtransferase TusA' Escherichia coli

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins