ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
ASTRAL-1.75B d1b0na2 a.35.1.3 68 see topology u'HTH-type transcriptional regulator SinR' Bacillus subtilis
ASTRAL-1.75B d1b0ua_ c.37.1.12 258 see topology u'Histidine transport ATP-binding protein HisP' Salmonella enterica
ASTRAL-1.75B d1b12a_ b.87.1.2 239 see topology u'Signal peptidase I' Escherichia coli
ASTRAL-1.75B d1b24a1 d.95.2.1 91 see topology u'Homing endonuclease I-DmoI' Desulfurococcus mucosus
ASTRAL-1.75B d1b24a2 d.95.2.1 79 see topology u'Homing endonuclease I-DmoI' Desulfurococcus mucosus
ASTRAL-1.75B d1b25a1 a.110.1.1 401 see topology u'Formaldehyde Pyrococcus furiosus
ASTRAL-1.75B d1b25a2 d.152.1.1 210 see topology u'Formaldehyde Pyrococcus furiosus
ASTRAL-1.75B d1b33n_ d.30.1.1 67 see topology u'Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core' Mastigocladus laminosus
ASTRAL-1.75B d1b34a_ b.38.1.1 80 see topology u'Small nuclear ribonucleoprotein Sm D1' Homo sapiens
ASTRAL-1.75B d1b34b_ b.38.1.1 74 see topology u'Small nuclear ribonucleoprotein Sm D2' Homo sapiens
ASTRAL-1.75B d1b35.1 b.121.4.1 282 see topology — —
ASTRAL-1.75B d1b35a_ b.121.4.1 260 see topology u'Structural polyprotein' Cricket paralysis virus
ASTRAL-1.75B d1b35b_ b.121.4.1 255 see topology u'Structural polyprotein' Cricket paralysis virus
ASTRAL-1.75B d1b3aa_ d.9.1.1 67 see topology u'C-C motif chemokine 5' Homo sapiens
ASTRAL-1.75B d1b3qa2 b.40.7.1 132 see topology u'Chemotaxis protein CheA' Thermotoga maritima
ASTRAL-1.75B d1b3ta_ d.58.8.1 147 see topology u'Epstein-Barr nuclear antigen 1' Human gammaherpesvirus 4
ASTRAL-1.75B d1b3ua_ a.118.1.2 588 see topology u'Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform' Homo sapiens
ASTRAL-1.75B d1b4fa_ a.60.1.2 74 see topology u'Ephrin type-B receptor 2' Homo sapiens
ASTRAL-1.75B d1b4ra_ b.1.3.1 80 see topology u'Polycystin-1' Homo sapiens
ASTRAL-1.75B d1b5ea_ d.117.1.1 241 see topology u'Deoxycytidylate 5-hydroxymethyltransferase' Enterobacteria phage T4 sensu lato
Table Description [Click here to expand]

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins