Protein Detail

Protein Information

Domain Id	d3ci0j1
DB_Source-Class	ASTRAL-1.75B, d.24.1.5
Molecule	u'Type II secretion system protein GspJ'
Residues	146
Sequence
SSE Sequence^*(13)	`HEEEEEEEEEEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.Ea.0.Ea.Ea.Ea.0.Ea.Ep.0.Ea.0-0.0.0.0.0.0.0.Ea.0.0.0-Ca.0.0.0.0.0.0.0.0.Ea-Ca.0.0.0.0.0.Ep.0.0-Cp.0.0.0.0.0.0.0-0.0.0.0.0.0.0-0.0.0.0.0.0-0.0.0.0.0-0.0.0.0-0.0.0-0.0-Cp`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d3ci0j1

Protein Id: d3ci0j1

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d3ci0j1

Protein Id: d3ci0j1

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEE	Ea.0-0	True	2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A,	d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEE	Ea.Ep-Ea	False	4AR6:A, 1IRO:A, 1YK4:A, 5NW3:A,	d1yk4a_,
4	EEEE	Ea.0.Ea-0.0-0	True	3BG4:D, 3UA0:A, 3UCI:A, 4R5R:A, 4R5R:B, 4ZRP:C, 4ZRP:D, 5B4Y:B, 5C13:A, 5C13:G, 5F0E:B, 5F86:B, 5JQP:B, 5KXH:B, 5KY0:B, 5KY4:B, 1J2L:A, 1KIG:L, 1LSL:A, 2QSK:A, 2W2N:E,	d1ataa_, d1b9wa2, d1i07a_, d1j2la_, d1jmab1, d1ppqa_, d1q4ga2, d2i9aa1, d2j01y1, d2qqra2, 1eqgA01, 1fycA00, 1i07A00, 1xkbA01, 2fd6A01,
4	EEEE	0.Ea.Ea-0.0-0	True	2YH9:A, 2YH9:B, 2YH9:C, 3OW2:Z, 3UL5:C, 4YX1:A, 4YX1:B, 5U6Z:A, 1VQO:1, 2QRD:B,	d1vq811, d2f1la1, d2qlvb2, 1vq8100, 2f1lA02,
4	EEEE	Ea.Ea.Ea-0.0-0	True	4A94:D, 5JB9:E, 1XDT:R,	d1autl1, d1auua_, d1eaic_, d1g1ta2, d1hx2a_, d1ijqa2, d1m7ja2, d1nzia2, d1szba2, d1tfia_, d1xdtr_, d2bz6l_, d2y5fl_, d3bpse1, 1auuA00, 1auuA00, 1eaiC00, 1hx2A00, 1moxD00, 1nziB02, 1ridA03, 1tfiA00, 1wj2A00, 2bz6L00,
4	EEEE	Ea.Ea.0-0.0-0	True	3IGM:A, 3IGM:B, 5DM6:F, 5FGO:A, 5FGO:C, 5FGO:E, 5FGO:F, 2WH7:A,	d1pd0a5,
4	EEEE	0.Ea.0-0.0-Ea	False		d1jhna3, d1nlta3, 1y8eB04,
5	EEEEE	Ea.0.Ea.Ea-0.0.0-0.0-0	False	1R8O:A,	d1v0ea2,
5	EEEEE	Ea.Ea.Ea.0-0.0.0-0.0-0	False	4JZE:L, 5PAX:A,	d2ct7a1, 1kliL00,
5	EEEEE	Ea.Ea.0.Ea-0.0.0-0.0-0	True	3BK3:C, 3BK3:D, 3QR7:A, 3QR7:B, 3VTO:A, 3VTO:B, 3VTO:C, 3VTO:P, 3VTO:Q, 3VTO:R, 5C6P:B,
8	EEEEEEEE	Ea.0.Ea.Ea.Ea.0.Ea-0.0.0.0.0.0-0.0.0.0.0-0.0.0.0-0.0.0-0.0-0	False		d1v1ha1, 1v1hE01,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3CI0	J	146	Type II secretion system protein GspJ	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3CI0	J	146	Type II secretion system protein GspJ	View
3MFB	A	145	Uncharacterized protein	View
3MFB	B	145	Uncharacterized protein	View
3MFB	C	145	Uncharacterized protein	View
3Q3Y	A	181	Genome polyprotein	View
3Q3Y	B	181	Genome polyprotein	View
3QZR	A	180	3C protein	View
3QZR	B	176	3C protein	View
3SH1	A	214	Soluble acetylcholine receptor	View
3SH1	B	215	Soluble acetylcholine receptor	View
3SH1	C	216	Soluble acetylcholine receptor	View
3SH1	D	214	Soluble acetylcholine receptor	View
3SH1	E	215	Soluble acetylcholine receptor	View
3SH1	F	214	Soluble acetylcholine receptor	View
3SH1	G	214	Soluble acetylcholine receptor	View
3SH1	H	215	Soluble acetylcholine receptor	View
3SH1	I	214	Soluble acetylcholine receptor	View
3SH1	J	215	Soluble acetylcholine receptor	View
3WTN	A	208	Acetylcholine-binding protein	View
3WTN	B	208	Acetylcholine-binding protein	View
3WTN	C	208	Acetylcholine-binding protein	View
3WTN	D	208	Acetylcholine-binding protein	View
3WTN	F	208	Acetylcholine-binding protein	View
3WTN	G	208	Acetylcholine-binding protein	View
3WTN	H	208	Acetylcholine-binding protein	View
3WTN	I	208	Acetylcholine-binding protein	View
3WTN	J	208	Acetylcholine-binding protein	View
3ZVE	A	189	Genome polyprotein	View
4AFH	A	213	Capitella teleta achbp	View
4AFH	B	213	Capitella teleta achbp	View
4AFH	C	213	Capitella teleta achbp	View
4AFH	D	213	Capitella teleta achbp	View
4AFH	E	212	Capitella teleta achbp	View
4DCD	A	184	Genome polyprotein	View
4FRR	A	208	Soluble acetylcholine receptor	View
4FRR	B	211	Soluble acetylcholine receptor	View
4FRR	C	210	Soluble acetylcholine receptor	View
4FRR	D	211	Soluble acetylcholine receptor	View
4FRR	E	211	Soluble acetylcholine receptor	View
4FRR	F	210	Soluble acetylcholine receptor	View
4FRR	G	208	Soluble acetylcholine receptor	View
4FRR	H	209	Soluble acetylcholine receptor	View
4FRR	I	210	Soluble acetylcholine receptor	View
4FRR	J	214	Soluble acetylcholine receptor	View
4MXT	A	183	Uncharacterized protein	View
4UXU	A	210	Neuronal acetylcholine receptor subunit alpha-9	View
4UXU	B	210	Neuronal acetylcholine receptor subunit alpha-9	View
4ZF5	A	224	Green fluorescent protein	View
4ZJS	A	206	Soluble acetylcholine receptor	View
4ZJS	B	206	Soluble acetylcholine receptor	View
4ZJS	C	205	Soluble acetylcholine receptor	View
4ZJS	D	206	Soluble acetylcholine receptor	View
4ZJS	E	205	Soluble acetylcholine receptor	View
4ZK1	A	213	Acetylcholine-binding protein	View
4ZK1	C	205	Acetylcholine-binding protein	View
4ZK1	D	210	Acetylcholine-binding protein	View
4ZK1	F	211	Acetylcholine-binding protein	View
4ZK1	H	211	Acetylcholine-binding protein	View
4ZK1	I	208	Acetylcholine-binding protein	View
4ZK1	J	213	Acetylcholine-binding protein	View
5AFN	A	205	Acetylcholine-binding protein	View
5AFN	B	207	Acetylcholine-binding protein	View
5AFN	C	205	Acetylcholine-binding protein	View
5AFN	D	205	Acetylcholine-binding protein	View
5AFN	E	205	Acetylcholine-binding protein	View
5BW0	C	159	Type II secretion system protein J	View
5BW0	G	159	Type II secretion system protein J	View
5CO5	A	207	Soluble acetylcholine receptor	View
5CO5	B	207	Soluble acetylcholine receptor	View
5CO5	D	207	Soluble acetylcholine receptor	View
5CO5	G	207	Soluble acetylcholine receptor	View
5CO5	I	207	Soluble acetylcholine receptor	View
5FX6	A	180	Genome polyprotein	View
5L19	A	150	Tumor necrosis factor ligand superfamily member 6	View
5L74	A	151	Plexin-A2	View
1EAQ	A	121	Runt-related transcription factor 1	View
2J5U	A	211	Cell shape-determining protein MreC	View
2QC1	B	212	Acetylcholine receptor subunit alpha	View

Topology view of query protein [ProLego results]

d3ci0j1

Topology Information