Protein Detail

Protein Information

Domain Id	d2z3va_
DB_Source-Class	ASTRAL-1.75B, c.26.2.4
Molecule	u'Universal stress protein family'
Residues	137
Sequence
SSE Sequence^*(9)	`EHEHEHEHE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ca.Ca.Ca.Ca.Ca.Ca.Ca-Ep.Hp.Ep.0.0.Hp.Ep-0.0.Ca.0.0.0-0.0.0.0.0-Ca.Ca.0.0-Ep.0.0-0.Ca-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d2z3va_

Protein Id: d2z3va_

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d2z3va_

Protein Id: d2z3va_

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EHE	Ca.Ca-Ep	True	2X4K:B, 3EJ9:B, 3EJ9:D, 3EJ9:F, 3MB2:B, 3MB2:D, 3MB2:F, 3MB2:H, 3MB2:J, 3MB2:L, 4X1C:B, 2PJR:B,	d3ej9b_,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3HGM	C	135	TRAP-T-associated universal stress protein TeaD	View
3HGM	D	141	TRAP-T-associated universal stress protein TeaD	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2Z08	A	123	Universal stress protein family	View
3DLO	B	132	Uncharacterized protein	View
3DLO	D	133	Uncharacterized protein	View
3FDX	A	125	Uncharacterized protein	View
3FDX	B	125	Uncharacterized protein	View
3HGM	C	135	TRAP-T-associated universal stress protein TeaD	View
3HGM	D	141	TRAP-T-associated universal stress protein TeaD	View
3HH1	A	111	Ribosomal RNA small subunit methyltransferase I	View
3HH1	C	100	Ribosomal RNA small subunit methyltransferase I	View
3HH1	D	108	Ribosomal RNA small subunit methyltransferase I	View
3IDF	A	138	ORF138 protein	View
3IDF	B	135	ORF138 protein	View
3NOH	A	120	Uncharacterized protein	View
3TNJ	A	130	Universal stress protein	View
4N5T	A	90	Protein Mdm4	View
4WNY	A	132	Universal stress protein family	View
4ZFI	C	93	E3 ubiquitin-protein ligase Mdm2	View
5UJ0	A	142	Polynucleotide kinase	View
5UJ0	B	141	Polynucleotide kinase	View
1OFU	X	119	Cell division inhibitor SulA	View
2D1P	B	119	Protein TusC	View
2D1P	C	95	Protein TusB	View
2DUM	A	143	Putative uncharacterized protein PH0823	View
2HY5	C	101	DsrH	View
2PD2	A	108	Uncharacterized protein	View

Topology view of query protein [ProLego results]

d2z3va_

Topology Information