Protein Detail

Protein Information

Domain Id	d1bkba2
DB_Source-Class	ASTRAL-1.75B, b.40.4.5
Molecule	u'Translation initiation factor 5A'
Residues	62
Sequence
SSE Sequence^*(7)	`EEEEHEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.Ea.Ea.0.0.Ea-0.0.0.0.Cp-0.0.0.Ep-0.0.0-Ea.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d1bkba2

Protein Id: d1bkba2

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d1bkba2

Protein Id: d1bkba2

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEH	Ea.0-0	True	2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A,	d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
4	EEEE	0.Ea.Ea-0.0-0	True	2YH9:A, 2YH9:B, 2YH9:C, 3OW2:Z, 3UL5:C, 4YX1:A, 4YX1:B, 5U6Z:A, 1VQO:1, 2QRD:B,	d1vq811, d2f1la1, d2qlvb2, 1vq8100, 2f1lA02,
4	EEEH	Ea.Ea.0-0.0-0	True	3IGM:A, 3IGM:B, 5DM6:F, 5FGO:A, 5FGO:C, 5FGO:E, 5FGO:F, 2WH7:A,	d1pd0a5,
4	EEHE	Ea.0.0-0.0-0	True	1L2W:I, 1RGV:A, 1WZ3:A, 2FGO:A, 4BL0:B,	d1l2wi_, d1wz3a1, d2fgoa_,
5	EEEEH	0.Ea.Ea.0-0.0.0-0.0-0	False	1JJ2:Y, 1VQO:Z,
5	EEEHE	Ea.Ea.0.0-0.0.0-0.0-0	False	4U1E:G, 5DMB:D,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
1bkbA02	--	62	Translation initiation factor 5A	View
1bkbA02	--	62	Translation initiation factor 5A	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3AFP	A	109	Single-stranded DNA-binding protein	View
3AFP	B	115	Single-stranded DNA-binding protein	View
3EIV	A	98	Single-stranded DNA-binding protein 2	View
3EIV	B	111	Single-stranded DNA-binding protein 2	View
3EIV	D	100	Single-stranded DNA-binding protein 2	View
3EY6	A	118	Peptidyl-prolyl cis-trans isomerase FKBP8	View
3FHW	A	96	Primosomal replication protein n	View
3FHW	B	96	Primosomal replication protein n	View
3K8A	A	100	Primosomal replication protein n	View
3K8A	B	103	Primosomal replication protein n	View
3MDY	B	109	Peptidyl-prolyl cis-trans isomerase FKBP1A	View
3MDY	D	109	Peptidyl-prolyl cis-trans isomerase FKBP1A	View
3Q6C	A	64	probable receptor YhhM	View
3Q6C	B	65	probable receptor YhhM	View
3Q6C	C	65	probable receptor YhhM	View
3Q6C	D	65	probable receptor YhhM	View
3Q6C	E	62	probable receptor YhhM	View
3Q6C	F	65	probable receptor YhhM	View
3Q6C	G	65	probable receptor YhhM	View
3Q6C	H	65	probable receptor YhhM	View
3Q6C	I	69	probable receptor YhhM	View
3Q6C	J	62	probable receptor YhhM	View
3Q6C	K	63	probable receptor YhhM	View
3Q6C	L	65	probable receptor YhhM	View
3Q6C	M	65	probable receptor YhhM	View
3Q6C	N	64	probable receptor YhhM	View
3Q6C	O	68	probable receptor YhhM	View
3Q6C	P	63	probable receptor YhhM	View
3RD4	A	76	Uncharacterized protein	View
3TQY	A	107	Single-stranded DNA-binding protein	View
3TQY	B	107	Single-stranded DNA-binding protein	View
3TQY	C	106	Single-stranded DNA-binding protein	View
3TQY	D	96	Single-stranded DNA-binding protein	View
3U2S	C	90	Envelope glycoprotein gp160	View
3U2S	G	90	Envelope glycoprotein gp160	View
3U4E	G	108	Envelope glycoprotein gp160	View
3U4E	J	109	Envelope glycoprotein gp160	View
3VDY	A	101	Single-stranded DNA-binding protein B	View
3VDY	B	97	Single-stranded DNA-binding protein B	View
4DAM	A	113	Single-stranded DNA-binding protein 1	View
4DAM	B	108	Single-stranded DNA-binding protein 1	View
4DAM	C	100	Single-stranded DNA-binding protein 1	View
4DAM	D	109	Single-stranded DNA-binding protein 1	View
4DAM	E	112	Single-stranded DNA-binding protein 1	View
4DAM	F	110	Single-stranded DNA-binding protein 1	View
4DAM	G	98	Single-stranded DNA-binding protein 1	View
4DAM	H	108	Single-stranded DNA-binding protein 1	View
4DAM	I	110	Single-stranded DNA-binding protein 1	View
4DAM	J	108	Single-stranded DNA-binding protein 1	View
4DAM	K	111	Single-stranded DNA-binding protein 1	View
4DAM	L	100	Single-stranded DNA-binding protein 1	View
4IT6	A	111	RE50353p	View
4IT6	B	112	RE50353p	View
4M1U	E	70	Verocytotoxin 2 subunit B	View
4OSN	A	110	Envelope glycoprotein B	View
4X33	A	60	Diphthamide biosynthesis protein 3	View
5GPG	A	110	Peptidyl-prolyl cis-trans isomerase FKBP3	View
5GQO	A	97	Single-stranded DNA-binding protein	View
5GQO	B	98	Single-stranded DNA-binding protein	View
5HKG	A	107	Peptidyl-prolyl cis-trans isomerase FKBP1B	View
5I98	A	120	FK506-binding protein 1	View
5I98	B	119	FK506-binding protein 1	View
1UE1	A	113	Single-stranded DNA-binding protein	View
1X3E	A	110	Single-stranded DNA-binding protein	View
1Z9F	A	89	Single-stranded DNA-binding protein	View
2VW9	A	109	Single-stranded DNA-binding protein	View

Topology view of query protein [ProLego results]

d1bkba2

Topology Information