Protein Detail

Protein Information

PDBId & Chain	5DM6 : 1
Molecule	50S ribosomal protein L33
Residues	54
Sequence
SSE Sequence^*(4)	`EEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.0.Ea-Ep.Ep-Ea`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 5DM6_1

Protein Id: 5DM6_1

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 5DM6_1

Protein Id: 5DM6_1

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	Ea.0-Ep	False		d2jdih2,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
4X9Z	A	49	Conotoxin GeXXA	View
4X9Z	B	46	Conotoxin GeXXA	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2Y5P	A	72	Internalin B	View
2Y5P	B	72	Internalin B	View
2Y5P	C	73	Internalin B	View
2ZJR	4	37	50S ribosomal protein L36	View
2ZJR	R	110	50S ribosomal protein L24	View
3A5Z	F	59	Elongation factor P	View
3BDU	A	51	Putative lipoprotein	View
3BDU	B	50	Putative lipoprotein	View
3BDU	C	50	Putative lipoprotein	View
3BDU	D	50	Putative lipoprotein	View
3BDU	E	51	Putative lipoprotein	View
3BDU	F	50	Putative lipoprotein	View
3BDU	G	50	Putative lipoprotein	View
3BG4	D	46	Guamerin	View
3KCG	L	54	Coagulation factor IX	View
3KVP	A	42	Uncharacterized protein YmzC	View
3KVP	B	42	Uncharacterized protein YmzC	View
3KVP	E	42	Uncharacterized protein YmzC	View
3KVP	F	41	Uncharacterized protein YmzC	View
3TBN	A	87	Putative uncharacterized protein	View
3UA0	A	76	Fibroin heavy chain	View
3UCI	A	72	Zinc metalloproteinase/disintegrin	View
4A94	D	51	Metallocarboxypeptidase inhibitor	View
4AY9	B	107	Follitropin subunit beta	View
4AY9	E	107	Follitropin subunit beta	View
4AY9	H	107	Follitropin subunit beta	View
4BV4	L	66	Protein spaetzle	View
4BV4	M	68	Protein spaetzle	View
4LE9	A	59	Proto-oncogene tyrosine-protein kinase Src	View
4LXR	J	64	Protein spaetzle	View
4LXR	K	66	Protein spaetzle	View
4OZC	A	50	Immunoglobulin G-binding protein G	View
4OZK	A	49	Putative bacteriocin	View
4QQ6	A	58	Survival motor neuron protein	View
4QQG	B	67	Histone acetyltransferase KAT5	View
4QQG	F	70	Histone acetyltransferase KAT5	View
4R5R	A	68	Zinc metalloproteinase/disintegrin	View
4R5R	B	68	Zinc metalloproteinase/disintegrin	View
4X0N	B	44	Helianthamide	View
4YU8	A	72	Neuroblastoma suppressor of tumorigenicity 1	View
4YX7	A	65	Surface presentation of antigens protein SpaO	View
4YX7	D	65	Surface presentation of antigens protein SpaO	View
4ZRP	C	78	CD320 antigen	View
4ZRP	D	79	CD320 antigen	View
5AOQ	L	86	Prothoracicotropic hormone	View
5AOQ	M	88	Prothoracicotropic hormone	View
5B4Y	B	79	Low-density lipoprotein receptor-related protein 8	View
5C13	A	59	Transcription initiation factor TFIID subunit 3	View
5C13	C	59	Transcription initiation factor TFIID subunit 3	View
5C13	E	59	Transcription initiation factor TFIID subunit 3	View
5C13	G	59	Transcription initiation factor TFIID subunit 3	View
5F0E	B	88	Glucosidase 2 subunit beta	View
5F86	B	39	Coagulation factor IX	View
5HCC	D	47	Dermacentor andersoni RaCI3	View
5HCD	D	49	Rhipicephalus microplus RaCI2	View
5JB9	E	51	Coagulation factor IX	View
5JQP	B	131	Glucosidase 2 subunit beta-like protein	View
5KXH	B	38	Coagulation factor VII	View
5KY0	B	38	Neurogenic locus notch homolog protein 1	View
5KY4	B	36	Neurogenic locus notch homolog protein 1	View
1EJA	B	53	Bdellastasin	View
1HCN	B	110	Choriogonadotropin subunit beta 3	View
1I71	A	83	Apolipoprotein(a)	View
1J2L	A	68	Disintegrin triflavin	View
1KIG	L	51	Coagulation factor X	View
1KRN	A	79	Plasminogen	View
1LSL	A	113	Thrombospondin-1	View
1R8O	B	71	Kunitz trypsin inhibitor	View
1XDT	R	41	Proheparin-binding EGF-like growth factor	View
2A28	A	54	Protein BZZ1	View
2QSK	A	95	Scytovirin	View
2RD1	A	55	Putative outer membrane lipoprotein	View
2W2N	E	49	Low-density lipoprotein receptor	View

Topology view of query protein [ProLego results]

5DM6 : 1

Topology Information