Protein Detail

Protein Information

Domain Id	1uglA00
DB_Source-Class	CATH 3.5, 3.30.30.70
Molecule	S-locus pollen protein
Residues	50
Sequence
SSE Sequence^*(3)	`EHE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.0-Ea`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1uglA00

Protein Id: 1uglA00

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1uglA00

Protein Id: 1uglA00

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
d1sddb1	--	67	u'Coagulation factor V'	View
d1ugla_	--	50	u'S-locus pollen protein'	View
d1y7ma2	--	47	u'Putative L,D-transpeptidase YkuD'	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
5TDC	C	71	E3 ubiquitin-protein ligase UBR1	View
2V89	A	78	V(D)J recombination-activating protein 2	View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2X4K	B	62	Probable tautomerase SAR1376	View
3EJ9	B	59	Beta-subunit of trans-3-chloroacrylic acid dehalogenase	View
3EJ9	D	58	Beta-subunit of trans-3-chloroacrylic acid dehalogenase	View
3EJ9	F	58	Beta-subunit of trans-3-chloroacrylic acid dehalogenase	View
3MB2	B	59	Uncharacterized protein	View
3MB2	D	58	Uncharacterized protein	View
3MB2	F	54	Uncharacterized protein	View
3MB2	H	58	Uncharacterized protein	View
3MB2	J	59	Uncharacterized protein	View
3MB2	L	54	Uncharacterized protein	View
3S2R	A	64	CDGSH iron-sulfur domain-containing protein NEET	View
3S2R	B	78	CDGSH iron-sulfur domain-containing protein NEET	View
4EZF	A	75	CDGSH iron-sulfur domain-containing protein 1	View
4EZF	B	65	CDGSH iron-sulfur domain-containing protein 1	View
4OOA	A	66	CDGSH iron-sulfur domain-containing protein 2	View
4OOA	B	66	CDGSH iron-sulfur domain-containing protein 2	View
4OOA	C	64	CDGSH iron-sulfur domain-containing protein 2	View
4OOA	D	64	CDGSH iron-sulfur domain-containing protein 2	View
4OOA	E	65	CDGSH iron-sulfur domain-containing protein 2	View
4OOA	F	67	CDGSH iron-sulfur domain-containing protein 2	View
4R10	B	41	Cadherin-related hmr-1	View
4X1C	B	55	2-hydroxymuconate tautomerase	View
2PJR	B	95	ATP-dependent DNA helicase PcrA	View

Topology view of query protein [ProLego results]

1uglA00

Topology Information