Protein Detail

Protein Information

Domain Id	1r2qA00
DB_Source-Class	CATH 3.5, 3.40.50.300
Molecule	Ras-related protein Rab-5A
Residues	170
Sequence
SSE Sequence^*(11)	`EHEEHEHEHEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Cp.Ea.Ca.0.Ca.Ca.Ca.Ca.Ca-0.Ca.0.0.Hr.Ep.Hp.Ep.0-Ep.0.0.0.0.0.0.Ca-Ca.Ca.0.0.0.Ep.0-Ep.0.0.0.0.Ca-Ca.Ca.0.0.0-0.0.0.Ca-0.0.Cp-0.Hr-Ca`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1r2qA00

Protein Id: 1r2qA00

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1r2qA00

Protein Id: 1r2qA00

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEH	Ea.Ca-0	True	3OW2:T, 1VQO:U, 2PUY:A,	d1vq8u1, d1we9a_, d1wjva1, d2puya_, 1vq8U00,
3	EHE	Ca.Ca-Ep	True	2X4K:B, 3EJ9:B, 3EJ9:D, 3EJ9:F, 3MB2:B, 3MB2:D, 3MB2:F, 3MB2:H, 3MB2:J, 3MB2:L, 4X1C:B, 2PJR:B,	d3ej9b_,
4	EEHE	Ea.Ca.0-0.0-0	False

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3MJH	A	168	Ras-related protein Rab-5A	View
3MJH	C	167	Ras-related protein Rab-5A	View
1R2Q	A	170	Ras-related protein Rab-5A	View
1Z0J	A	169	Ras-related protein Rab-22A	View
d1r2qa_	--	170	u'Ras-related protein Rab-5A'	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3C5C	A	164	Ras-like protein family member 12	View
3C5C	B	167	Ras-like protein family member 12	View
3C5C	C	164	Ras-like protein family member 12	View
3C5C	D	164	Ras-like protein family member 12	View
3CLV	A	175	Rab5a, GTPase	View
3IHW	A	167	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3	View
3LLU	A	177	Ras-related GTP-binding protein C	View
3NKL	A	120	UDP-D-quinovosamine 4-dehydrogenase	View
3NKL	B	121	UDP-D-quinovosamine 4-dehydrogenase	View
3TJZ	D	159	ADP-ribosylation factor 1	View
3X1X	A	166	Ras-related protein Rap-1b	View
4K81	B	171	GTPase HRas	View
4K81	D	171	GTPase HRas	View
4K81	F	171	GTPase HRas	View
4K81	H	171	GTPase HRas	View
4V0K	A	151	ARF-like small GTPase	View
4V0K	B	164	ARF-like small GTPase	View
5KSP	B	155	Mitochondrial Rho GTPase 1	View
1R8S	A	160	ADP-ribosylation factor 1	View
1U8Z	A	165	Ras-related protein Ral-A	View
2CE2	X	166	GTPase HRas	View
2EFE	B	165	Ras-related protein RABF2b	View
2F7S	A	179	Ras-related protein Rab-27B	View
2FH5	B	188	Signal recognition particle receptor subunit beta	View
2FN4	A	173	Ras-related protein R-Ras	View
2IWR	A	174	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2	View
2NZJ	A	155	GTP-binding protein REM 1	View
4KU4	A	173		View
3K8Y	A	166	GTPase HRas	View
4G0N	A	164	GTPase HRas	View

Topology view of query protein [ProLego results]

1r2qA00

Topology Information