Protein Detail

Protein Information

Domain Id	1q42A00
DB_Source-Class	CATH 3.5, 3.10.450.50
Molecule	mRNA transport regulator MTR2
Residues	159
Sequence
SSE Sequence^*(9)	`HHEEHEEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.0.Ea.0.Ca.Ea.Ea.Ea-0.0.Cp.0.0.0.Ep-0.Hr.0.0.0.0-0.0.0.0.Cp-Ca.0.0.0-Cp.0.Ep-Ca.0-Cp`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1q42A00

Protein Id: 1q42A00

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1q42A00

Protein Id: 1q42A00

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEH	Ea.0-Cp	True	2V89:A,	d1hnra_, d1vyxa_, d2j9ub1, d2v89a_, 1hnrA00, 1vyxA00,
3	HEE	Ca.Ea-0	False	3K65:A,	d1dwka2, d1h5oa_, 1h5oA00,
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEE	Ea.Ea-Ep	True	2XTT:A, 3CFA:L, 3CFA:M, 3CFA:R, 3CFA:S, 3CFH:L, 3CFH:M, 3CFH:R, 3CFH:S, 3LE4:A, 3MLQ:E, 3MLQ:H, 3TVJ:I, 4F98:A, 4GWT:A, 4N7F:A, 4N7F:B, 4REX:A, 5DZD:B, 5E24:B, 5E24:D, 1NH2:C, 1NVP:C, 2A50:A, 2HIP:A,	d1gl0i_, d1goia1, d1kbea_, d1mkna_, d1nh2c_, d1nh2d2, d1o9aa1, d1rl2a2, d2dk1a1, d2hipa_, d2ho2a1, d2jmfa1, 1kbeA00, 1mknA00, 1nh2C00, 1nvpC00, 1o9aA01,
4	HHEE	0.0.Ea-0.0-0	True	3ZIA:I, 3ZIA:S, 5LSL:E, 5LSL:G, 5LSL:H, 2DSR:G,	d2dsrg1,
4	EHEE	0.Ca.Ea-0.0-0	False	5LSL:F,	1jsuC00,
4	HEEE	Ca.Ea.Ea-0.0-0	False		d1eg3a3, 1eg3A01,
4	EEEE	Ea.Ea.Ea-0.Ep-0	True	3KVP:F, 4BV4:M, 4LXR:J, 4QQG:B, 4QQG:F, 2A28:A,	d1b9wa1, d1exta2, d1k4us_, d1kloa2, d1qypa_, d1wfwa_, d2heyr1, 1qypA00,
5	HHEEH	0.0.Ea.0-0.0.Cp-0.Hr-0	False	3VIQ:C,
5	EHEEE	0.Ca.Ea.Ea-0.0.0-0.0-0	False		d1rmja_,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
1Q42	A	159	mRNA transport regulator MTR2	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3BNV	A	140	Cj0977	View
3BNV	C	140	Cj0977	View
3BNV	D	141	Cj0977	View
3BNV	F	137	Cj0977	View
3BNV	H	128	Cj0977	View
3CNX	B	144	Uncharacterized protein	View
3DMC	A	130	Uncharacterized protein	View
3DMC	B	130	Uncharacterized protein	View
3DUK	A	122	Uncharacterized protein	View
3DUK	B	122	Uncharacterized protein	View
3DUK	D	122	Uncharacterized protein	View
3DUK	E	122	Uncharacterized protein	View
3DUK	F	122	Uncharacterized protein	View
3E1E	A	136	Thioesterase family protein	View
3E1E	B	140	Thioesterase family protein	View
3E1E	C	141	Thioesterase family protein	View
3E1E	D	137	Thioesterase family protein	View
3E1E	E	141	Thioesterase family protein	View
3E1E	F	141	Thioesterase family protein	View
3E1E	G	141	Thioesterase family protein	View
3E1E	H	141	Thioesterase family protein	View
3E29	B	129	Uncharacterized protein	View
3E29	D	127	Uncharacterized protein	View
3EBT	A	127	Uncharacterized protein	View
3ER7	A	115	Uncharacterized protein	View
3ER7	B	119	Uncharacterized protein	View
3F7S	A	134	Uncharacterized protein	View
3FKA	A	113	Uncharacterized protein	View
3FKA	B	114	Uncharacterized protein	View
3FKA	C	113	Uncharacterized protein	View
3FKA	D	113	Uncharacterized protein	View
3FSD	A	120	Uncharacterized protein	View
3GZX	B	186	Biphenyl dioxygenase subunit beta	View
3HK4	A	114	Mlr7391 protein	View
3HK4	B	114	Mlr7391 protein	View
3HK4	C	113	Mlr7391 protein	View
3HK4	D	113	Mlr7391 protein	View
3HX8	A	124	Mlr2180 protein	View
3HX8	B	123	Mlr2180 protein	View
3HX8	C	122	Mlr2180 protein	View
3HX8	D	124	Mlr2180 protein	View
3LQ9	A	126	DNA damage-inducible transcript 4 protein	View
3LQ9	B	124	DNA damage-inducible transcript 4 protein	View
3NWZ	A	149	BH2602 protein	View
3NWZ	B	146	BH2602 protein	View
4K4C	A	137	Proofreading thioesterase EntH	View
4K4C	B	137	Proofreading thioesterase EntH	View
4K4C	C	137	Proofreading thioesterase EntH	View
4K4C	D	137	Proofreading thioesterase EntH	View
4L8O	A	165	Bile acid 7-alpha dehydratase	View
4LMI	A	134	Uncharacterized protein	View
4LMI	B	135	Uncharacterized protein	View
4MJD	A	113	Uncharacterized protein	View
4MJD	B	113	Uncharacterized protein	View
4OUQ	A	106	Uncharacterized protein	View
4QD8	A	139	Putative esterase PA1618	View
4QD8	B	139	Putative esterase PA1618	View
4QD8	C	139	Putative esterase PA1618	View
4QD8	D	139	Putative esterase PA1618	View
4QD8	E	139	Putative esterase PA1618	View
4QD8	F	139	Putative esterase PA1618	View
4U13	A	107	Uncharacterized protein	View
4U13	B	107	Uncharacterized protein	View
5AEW	B	183	Biphenyl dioxygenase subunit beta	View
5AEW	D	183	Biphenyl dioxygenase subunit beta	View
5AEW	F	184	Biphenyl dioxygenase subunit beta	View
5AEW	H	181	Biphenyl dioxygenase subunit beta	View
5AEW	J	175	Biphenyl dioxygenase subunit beta	View
5AEW	L	182	Biphenyl dioxygenase subunit beta	View
5AEW	N	183	Biphenyl dioxygenase subunit beta	View
5AEW	P	181	Biphenyl dioxygenase subunit beta	View
5AEW	R	181	Biphenyl dioxygenase subunit beta	View
5AEW	T	182	Biphenyl dioxygenase subunit beta	View
5AEW	V	181	Biphenyl dioxygenase subunit beta	View
5IG0	A	131	CAMK/CAMK2 protein kinase	View
5IG4	A	129	Predicted protein	View
5IG4	B	130	Predicted protein	View
5IG4	C	128	Predicted protein	View
5IG4	D	130	Predicted protein	View
5IG4	F	129	Predicted protein	View
5IG4	G	130	Predicted protein	View
5TGN	A	107	Uncharacterized protein	View
5TGN	B	106	Uncharacterized protein	View
5TGN	C	105	Uncharacterized protein	View
5TGN	D	107	Uncharacterized protein	View
1HKX	A	141	Calcium/calmodulin-dependent protein kinase type II subunit alpha	View
1OF5	B	128	mRNA transport regulator MTR2	View
1SC0	A	135	Putative esterase HI_1161	View
1TP6	A	126	Uncharacterized protein	View
1VH5	A	138	1,4-dihydroxy-2-naphthoyl-CoA hydrolase	View
2B1X	B	167	Naphthalene dioxygenase small subunit	View
2F86	B	129	Calcium/calmodulin-dependent protein kinase type II	View
2UX0	A	137	Calcium/calmodulin-dependent protein kinase type II subunit gamma	View
2W2C	A	128	Calcium/calmodulin-dependent protein kinase type II subunit delta	View

Topology view of query protein [ProLego results]

1q42A00

Topology Information