ProLego Protein as lego blocks ...
 

Topology view of query protein [ProLego results]

Protein Information
Domain Id 1a6jA00
DB_Source-ClassCATH 3.5, 3.40.930.10
MoleculeNitrogen regulatory protein
Residues150
Sequence
SSE Sequence*(11) EHHEEEEEHHH
* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]
Protein Topology 

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand]
Ca.Hr.0.Ea.0.0.Ea.Ca.Hr.Ha-0.0.0.0.0.Ep.0.Ca.Hr-0.0.Ca.0.Ep.0.Cp.0-0.0.0.0.0.0.Ca-0.Ca.Ca.0.Cp.0-Ep.Cp.0.0.0-0.0.0.0-0.0.0-0.0-Ca

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1a6jA00
shapeImage
Protein Id: 1a6jA00

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1a6jA00
shapeImage
Protein Id: 1a6jA00

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology
#SSE SSE string Contact String Preferrence  ProteinDB  DomainsDB
3 HHE Hr.0-0 True 2ZXX:D, 2ZXX:E, 3H87:D, 3KXE:C, 3KXE:D, 3PN7:D, 4FXE:A, 4FXE:B, 4J2N:B, 4J2N:D, 4QIC:B, 4QIC:D, 4Z8L:C, 5CEG:A, 5CEG:C, 1HWT:C, 1OV9:A, 1T0F:C, 1ZX3:A, 2BSQ:E, 2ER8:A, 5VJI:C, 5WWO:C, 5X3T:A, d1ov9a_, d1y9ba1, d2bska1, d2bsqe1, 1bpeA01, 1bpeA01, 1uklC00,
3 HEE 0.Ea-0 True 2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A, d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3 EEE Ea.0-0 True 2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A, d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
3 EEH Ea.Ca-0 True 3OW2:T, 1VQO:U, 2PUY:A, d1vq8u1, d1we9a_, d1wjva1, d2puya_, 1vq8U00,
3 HHH Hr.Ha-Hr True 3AJF:C, 3AJF:D, 3CX5:F, 3CX5:Q, 3PH0:B, 4D6K:F, 4MZZ:A, 4MZZ:B, 1CXZ:B, 1ZEI:A, 2GSV:A, 2NN4:A, 2OXL:A, 2UWJ:E, d1cxzb_, d1fafa_, d1vq8v1, d2dt7b1, d2elca1, d2gsva1, d2nn4a1, d3cx5f1, 1cxzB00, 1cxzB00, 1fafA00, 1qzpA00, 1trlA00, 1vq8V00, 2nn4A00, 3cx5F00,
4 HHEE Hr.0.Ea-0.0-0 False 1NL1:A,
4 EEEE Ea.0.0-0.0-0 True 1L2W:I, 1RGV:A, 1WZ3:A, 2FGO:A, 4BL0:B, d1l2wi_, d1wz3a1, d2fgoa_,
Protein In ProLegoDB with identical/similar Topology