Protein Detail

Protein Information

Domain Id	d3pxxa_
DB_Source-Class	ASTRAL-1.75B, c.2.1.0
Molecule	u'Carveol dehydrogenase'
Residues	282
Sequence
SSE Sequence^*(17)	`EHEHEHEHHEHHEHHHE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ca.Ca.Ca.Ca.0.0.Hp.Ca.0.Hr.Ca.0.Hp.0.Ca-Ep.Hp.Ep.0.0.0.Ca.0.0.Ca.Cp.0.0.0.0-0.0.Ca.0.0.Hp.Ep.0.Hp.Ep.0.0.Ca.0-0.0.0.0.0.0.0.Hp.0.0.0.0.Ep-Ca.Ca.0.0.0.0.0.0.0.0.0.Ca-Ep.0.0.0.0.0.0.0.0.Ca.0-0.0.0.0.0.0.0.0.0.0-Ca.Ca.0.0.0.0.0.0.0-0.0.0.0.0.0.Ca.0-0.0.0.0.0.0.0-0.0.0.0.0.0-0.0.0.0.0-0.0.0.0-0.Hr.0-0.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d3pxxa_

Protein Id: d3pxxa_

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d3pxxa_

Protein Id: d3pxxa_

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EHE	Ca.Ca-Ep	True	2X4K:B, 3EJ9:B, 3EJ9:D, 3EJ9:F, 3MB2:B, 3MB2:D, 3MB2:F, 3MB2:H, 3MB2:J, 3MB2:L, 4X1C:B, 2PJR:B,	d3ej9b_,
3	EHH	0.Hp-0	False	2ZSI:B, 3CS5:A, 3CS5:B, 3CS5:D, 4EFA:G, 4ICG:A, 4ICG:B, 5APP:A, 1LGH:A, 1M1J:A, 2F60:K,	d1lgha_, d1qo8a1, 1k1fD00, 1lghA00, 1m1jA00,
3	HHH	Hp.0-0	False	3HLS:E, 3HLS:F, 3HLS:H, 3MP7:B, 3MQ7:B, 3MQ7:C, 3MQ7:D, 3MQ7:E, 5ED9:B, 2BL0:A,	d3ag3i_, 1v54I00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3A28	G	257	L-2,3-butanediol dehydrogenase	View
3AFN	A	257	Carbonyl reductase	View
3AFN	B	257	Carbonyl reductase	View
3AFN	C	257	Carbonyl reductase	View
3AFN	D	257	Carbonyl reductase	View
3FTP	A	248	3-oxoacyl-(Acyl-carrier-protein) reductase	View
3FTP	B	248	3-oxoacyl-(Acyl-carrier-protein) reductase	View
3GK3	B	243	Acetoacetyl-CoA reductase	View
3GK3	D	241	Acetoacetyl-CoA reductase	View
3ICC	B	248	Short-chain dehydrogenase	View
3IJR	A	277	Short chain dehydrogenase family protein	View
3IJR	C	277	Short chain dehydrogenase family protein	View
3IJR	D	277	Short chain dehydrogenase family protein	View
3IJR	H	284	Short chain dehydrogenase family protein	View
3PXX	A	282	Carveol dehydrogenase	View
3PXX	B	274	Carveol dehydrogenase	View
3PXX	C	275	Carveol dehydrogenase	View
3PXX	D	273	Carveol dehydrogenase	View
3PXX	E	275	Carveol dehydrogenase	View
3PXX	F	277	Carveol dehydrogenase	View
3RWB	A	247	Pyridoxal 4-dehydrogenase	View
3RWB	B	247	Pyridoxal 4-dehydrogenase	View
3RWB	C	247	Pyridoxal 4-dehydrogenase	View
3RWB	D	247	Pyridoxal 4-dehydrogenase	View
4CQM	H	249	Estradiol 17-beta-dehydrogenase 8	View
4EGF	F	257	L-xylulose reductase	View
4GVX	B	258	Short-chain dehydrogenase/reductase SDR	View
4GVX	C	258	Short-chain dehydrogenase/reductase SDR	View
4GVX	D	258	Short-chain dehydrogenase/reductase SDR	View
4JRO	C	247	FabG protein	View
4K6F	A	241	Putative Acetoacetyl-CoA reductase	View
4K6F	B	245	Putative Acetoacetyl-CoA reductase	View
4K6F	C	245	Putative Acetoacetyl-CoA reductase	View
4K6F	D	245	Putative Acetoacetyl-CoA reductase	View
4M8S	A	247	Putative 3-oxoacyl-[acyl-carrier protein] reductase	View
4M8S	B	246	Putative 3-oxoacyl-[acyl-carrier protein] reductase	View
4M8S	C	247	Putative 3-oxoacyl-[acyl-carrier protein] reductase	View
4MOW	A	248	Putative glucose 1-dehydrogenase	View
4MOW	B	245	Putative glucose 1-dehydrogenase	View
4N5M	A	246	Acetoacetyl-CoA reductase	View
4N5M	B	246	Acetoacetyl-CoA reductase	View
4NBU	A	242	3-oxoacyl-(Acyl-carrier-protein) reductase	View
4NBU	B	244	3-oxoacyl-(Acyl-carrier-protein) reductase	View
4NBU	C	242	3-oxoacyl-(Acyl-carrier-protein) reductase	View
4TKL	A	246	NADH-dependent reductase for 4-deoxy-L-erythro-5-hexoseulose uronate	View
5EN4	A	251	17-beta-hydroxysteroid dehydrogenase 14	View
5JY1	A	266	Putative short-chain dehydrogenase/reductase	View
5JY1	B	266	Putative short-chain dehydrogenase/reductase	View
5JY1	C	266	Putative short-chain dehydrogenase/reductase	View
5JY1	D	266	Putative short-chain dehydrogenase/reductase	View
5T5Q	D	245	Short-chain dehydrogenase/reductase SDR:Glucose/ribitol dehydrogenase	View
5THQ	A	248	3-oxoacyl-ACP reductase	View
5THQ	B	250	3-oxoacyl-ACP reductase	View
5THQ	C	250	3-oxoacyl-ACP reductase	View
5THQ	D	250	3-oxoacyl-ACP reductase	View
5THQ	E	250	3-oxoacyl-ACP reductase	View
5THQ	F	250	3-oxoacyl-ACP reductase	View
5THQ	G	248	3-oxoacyl-ACP reductase	View
5THQ	H	250	3-oxoacyl-ACP reductase	View
5U8P	A	292	Short chain dehydrogenase	View
5U8P	B	292	Short chain dehydrogenase	View
1EDO	A	244	3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic	View
1Q7B	A	243	3-oxoacyl-[acyl-carrier-protein] reductase FabG	View
1ZEM	A	260	Xylitol dehydrogenase	View
2PH3	A	245	3-oxoacyl-[acyl carrier protein] reductase	View

Topology view of query protein [ProLego results]

d3pxxa_

Topology Information