Protein Detail

Protein Information

Domain Id	d3pgxa_
DB_Source-Class	ASTRAL-1.75B, c.2.1.0
Molecule	u'Uncharacterized NAD-dependent oxidoreductase MAP_4146'
Residues	270
Sequence
SSE Sequence^*(15)	`EHEHEHEHHEHEHHE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ca.Ca.Ca.Ca.0.0.Hp.Ca.Ca.Ca.0.0.Ca-Ep.Hp.Ep.0.0.0.Ca.0.Hp.Ep.0.Ca.0-0.0.Ca.0.0.Hp.Ep.Hp.Ca.0.0.Ep-0.0.0.0.0.0.0.0.0.Ca.Ca-Ca.Ca.0.0.0.0.0.0.0.0-Ep.0.0.0.0.0.0.0.0-0.0.0.0.0.0.Ca.0-Ca.Ca.0.0.0.0.0-0.0.0.0.0.0-0.Ca.0.0.0-0.0.0.0-0.Hr.0-0.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d3pgxa_

Protein Id: d3pgxa_

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d3pgxa_

Protein Id: d3pgxa_

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EHE	Ca.Ca-Ep	True	2X4K:B, 3EJ9:B, 3EJ9:D, 3EJ9:F, 3MB2:B, 3MB2:D, 3MB2:F, 3MB2:H, 3MB2:J, 3MB2:L, 4X1C:B, 2PJR:B,	d3ej9b_,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2X9G	A	251	Pteridine reductase	View
2X9G	B	250	Pteridine reductase	View
2X9G	D	249	Pteridine reductase	View
2ZAT	B	251	Dehydrogenase/reductase SDR family member 4	View
2ZAT	C	251	Dehydrogenase/reductase SDR family member 4	View
3CTM	A	272	S-reductase	View
3CTM	E	265	S-reductase	View
3F1L	A	245	Uncharacterized oxidoreductase YciK	View
3F1L	B	244	Uncharacterized oxidoreductase YciK	View
3F9I	A	220	3-oxoacyl-[acyl-carrier-protein] reductase FabG	View
3F9I	B	229	3-oxoacyl-[acyl-carrier-protein] reductase FabG	View
3G1T	A	243	Oxidoreductase	View
3GAF	B	243	Short-chain dehydrogenase/reductase SDR	View
3GAF	C	243	Short-chain dehydrogenase/reductase SDR	View
3GAF	D	245	Short-chain dehydrogenase/reductase SDR	View
3GAF	E	243	Short-chain dehydrogenase/reductase SDR	View
3GAF	F	246	Short-chain dehydrogenase/reductase SDR	View
3GAF	G	246	Short-chain dehydrogenase/reductase SDR	View
3GED	A	242	Short-chain dehydrogenase/reductase SDR	View
3GEM	C	221	Oxidoreductase, short chain dehydrogenase/reductase family	View
3I4F	A	242	3-oxoacyl-[acyl-carrier protein] reductase	View
3I4F	B	242	3-oxoacyl-[acyl-carrier protein] reductase	View
3I4F	C	240	3-oxoacyl-[acyl-carrier protein] reductase	View
3I4F	D	242	3-oxoacyl-[acyl-carrier protein] reductase	View
3KZV	A	249	Uncharacterized oxidoreductase YIR035C	View
3O03	A	254	Dehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase)	View
3O4R	A	254	Dehydrogenase/reductase SDR family member 4	View
3O4R	B	252	Dehydrogenase/reductase SDR family member 4	View
3O4R	C	253	Dehydrogenase/reductase SDR family member 4	View
3O4R	D	251	Dehydrogenase/reductase SDR family member 4	View
3OID	A	249	Enoyl-[acyl-carrier-protein] reductase [NADPH] FabL	View
3OID	B	251	Enoyl-[acyl-carrier-protein] reductase [NADPH] FabL	View
3OID	C	248	Enoyl-[acyl-carrier-protein] reductase [NADPH] FabL	View
3OID	D	248	Enoyl-[acyl-carrier-protein] reductase [NADPH] FabL	View
3OIG	A	260	Enoyl-[acyl-carrier-protein] reductase [NADH] FabI	View
3OJF	A	257	Enoyl-[acyl-carrier-protein] reductase [NADH] FabI	View
3OJF	B	256	Enoyl-[acyl-carrier-protein] reductase [NADH] FabI	View
3OJF	C	256	Enoyl-[acyl-carrier-protein] reductase [NADH] FabI	View
3OJF	D	256	Enoyl-[acyl-carrier-protein] reductase [NADH] FabI	View
3OP4	A	235	3-oxoacyl-[acyl-carrier protein] reductase	View
3OP4	B	234	3-oxoacyl-[acyl-carrier protein] reductase	View
3P19	A	239	Putative blue fluorescent protein	View
3P19	D	238	Putative blue fluorescent protein	View
3PGX	A	270	Uncharacterized NAD-dependent oxidoreductase MAP_4146	View
3PGX	B	270	Uncharacterized NAD-dependent oxidoreductase MAP_4146	View
3PGX	C	270	Uncharacterized NAD-dependent oxidoreductase MAP_4146	View
3PGX	D	270	Uncharacterized NAD-dependent oxidoreductase MAP_4146	View
3PPI	B	258	3-hydroxyacyl-CoA dehydrogenase type-2	View
3PPI	D	254	3-hydroxyacyl-CoA dehydrogenase type-2	View
3R1I	A	254	Short-chain type dehydrogenase/reductase	View
3R1I	B	247	Short-chain type dehydrogenase/reductase	View
3R3S	A	292	Putative oxidoreductase	View
3R3S	B	292	Putative oxidoreductase	View
3R3S	C	292	Putative oxidoreductase	View
3R3S	D	292	Putative oxidoreductase	View
3SX2	A	268	Uncharacterized protein	View
3SX2	B	257	Uncharacterized protein	View
3SX2	C	257	Uncharacterized protein	View
3SX2	E	256	Uncharacterized protein	View
3SX2	G	267	Uncharacterized protein	View
3SX2	H	249	Uncharacterized protein	View
3TL3	B	234	Short-chain type dehydrogenase/reductase	View
3TOX	A	254	Putative oxidoreductase	View
3TOX	B	248	Putative oxidoreductase	View
3TOX	C	254	Putative oxidoreductase	View
3TOX	D	254	Putative oxidoreductase	View
3TOX	E	254	Putative oxidoreductase	View
3TOX	F	254	Putative oxidoreductase	View
3TOX	G	251	Putative oxidoreductase	View
3TOX	I	254	Putative oxidoreductase	View
3TSC	A	271	Uncharacterized protein	View
3TSC	B	271	Uncharacterized protein	View
3TSC	C	271	Uncharacterized protein	View
3TSC	D	271	Uncharacterized protein	View
3U49	C	252	Bacilysin biosynthesis oxidoreductase YwfH	View
3U49	D	242	Bacilysin biosynthesis oxidoreductase YwfH	View
3V2G	A	248	3-oxoacyl-[acyl-carrier-protein] reductase	View
3WTB	A	244	Putative oxidoreductase	View
3WTB	B	244	Putative oxidoreductase	View
3WTB	C	243	Putative oxidoreductase	View
3WTB	D	243	Putative oxidoreductase	View
3WTB	E	243	Putative oxidoreductase	View
3WTB	H	243	Putative oxidoreductase	View
3WYE	B	239	Diacetyl reductase [(S)-acetoin forming]	View
4BMN	C	237	Alclohol dehydrogenase/short-chain dehydrogenase	View
4CR6	A	255	N-acylmannosamine 1-dehydrogenase	View
4CR6	B	257	N-acylmannosamine 1-dehydrogenase	View
4CR6	C	255	N-acylmannosamine 1-dehydrogenase	View
4CR6	D	255	N-acylmannosamine 1-dehydrogenase	View
4D44	A	254	Enoyl-[acyl-carrier-protein] reductase [NADPH]	View
4D44	B	254	Enoyl-[acyl-carrier-protein] reductase [NADPH]	View
4D44	C	254	Enoyl-[acyl-carrier-protein] reductase [NADPH]	View
4D44	D	254	Enoyl-[acyl-carrier-protein] reductase [NADPH]	View
4D44	E	254	Enoyl-[acyl-carrier-protein] reductase [NADPH]	View
4D44	F	254	Enoyl-[acyl-carrier-protein] reductase [NADPH]	View
4D44	G	254	Enoyl-[acyl-carrier-protein] reductase [NADPH]	View
4D44	H	254	Enoyl-[acyl-carrier-protein] reductase [NADPH]	View
4ESO	A	247	Putative oxidoreductase	View
4ESO	B	248	Putative oxidoreductase	View
4ESO	C	244	Putative oxidoreductase	View
4ESO	D	239	Putative oxidoreductase	View
4FGS	A	238	Probable dehydrogenase protein	View
4FGS	C	232	Probable dehydrogenase protein	View
4FGS	D	232	Probable dehydrogenase protein	View
4FN4	A	254	Short chain dehydrogenase	View
4FN4	B	254	Short chain dehydrogenase	View
4FN4	C	254	Short chain dehydrogenase	View
4FN4	D	254	Short chain dehydrogenase	View
4J2H	A	249	Short chain alcohol dehydrogenase-related dehydrogenase	View
4KMS	A	236	Acetoacetyl-CoA reductase	View
4KMS	B	226	Acetoacetyl-CoA reductase	View
4KWH	A	252	Reductase homolog	View
4LVU	A	252	Short chain dehydrogenase family protein	View
4LVU	B	252	Short chain dehydrogenase family protein	View
4O6V	A	229	Oxidoreductase, short-chain dehydrogenase/reductase family	View
4O6V	B	232	Oxidoreductase, short-chain dehydrogenase/reductase family	View
4O6V	C	235	Oxidoreductase, short-chain dehydrogenase/reductase family	View
4O6V	D	232	Oxidoreductase, short-chain dehydrogenase/reductase family	View
4ONE	A	253	3-oxoacyl-(Acyl-carrier protein) reductase	View
4ONE	B	253	3-oxoacyl-(Acyl-carrier protein) reductase	View
4ONE	C	246	3-oxoacyl-(Acyl-carrier protein) reductase	View
4ONE	D	246	3-oxoacyl-(Acyl-carrier protein) reductase	View
4OSP	A	252	Oxygenase-reductase	View
4OSP	D	245	Oxygenase-reductase	View
4TRR	E	242	Putative D-beta-hydroxybutyrate dehydrogenase	View
4WEO	A	238	Putative acetoin(Diacetyl) reductase	View
4WEO	B	239	Putative acetoin(Diacetyl) reductase	View
4WEO	C	240	Putative acetoin(Diacetyl) reductase	View
4WEO	D	241	Putative acetoin(Diacetyl) reductase	View
4YXF	A	230	MupS	View
4Z9X	A	257	Putative 5-keto-D-gluconate 5-reductase	View
4ZA2	B	241	2-deoxy-D-gluconate 3-dehydrogenase	View
4ZA2	D	247	2-deoxy-D-gluconate 3-dehydrogenase	View
4ZGW	A	245	Putative oxidoreductase	View
5B1Y	A	234	3-oxoacyl-[acyl-carrier-protein] reductase	View
5B1Y	B	243	3-oxoacyl-[acyl-carrier-protein] reductase	View
5BT9	A	249	3-oxoacyl-(Acyl-carrier-protein) reductase	View
5BT9	B	247	3-oxoacyl-(Acyl-carrier-protein) reductase	View
5BT9	C	250	3-oxoacyl-(Acyl-carrier-protein) reductase	View
5BT9	D	244	3-oxoacyl-(Acyl-carrier-protein) reductase	View
5CEJ	A	234	3-oxoacyl-[acyl-carrier-protein] reductase	View
5H5X	A	248	Putative oxidoreductase	View
5H5X	B	253	Putative oxidoreductase	View
5H5X	D	250	Putative oxidoreductase	View
5H5X	F	253	Putative oxidoreductase	View
5H5X	H	252	Putative oxidoreductase	View
5H5X	I	243	Putative oxidoreductase	View
5H5X	J	253	Putative oxidoreductase	View
5H5X	L	246	Putative oxidoreductase	View
5I7S	A	257	Enoyl-[acyl-carrier-protein] reductase [NADH]	View
5IDQ	A	218	Short-chain dehydrogenase/reductase SDR	View
5IDQ	B	216	Short-chain dehydrogenase/reductase SDR	View
5JC8	C	252	Putative short-chain dehydrogenase/reductase	View
5T2V	A	239	Short-chain dehydrogenase/reductase SDR	View
5TF4	A	264	Enoyl-[acyl-carrier-protein] reductase [NADH]	View
5TF4	B	259	Enoyl-[acyl-carrier-protein] reductase [NADH]	View
5TF4	C	260	Enoyl-[acyl-carrier-protein] reductase [NADH]	View
5TF4	D	268	Enoyl-[acyl-carrier-protein] reductase [NADH]	View
5TF4	E	262	Enoyl-[acyl-carrier-protein] reductase [NADH]	View
5THK	A	255	Putative dehydrogenase	View
5THK	B	257	Putative dehydrogenase	View
5THK	C	255	Putative dehydrogenase	View
5THK	D	256	Putative dehydrogenase	View
5THK	E	256	Putative dehydrogenase	View
5THK	F	256	Putative dehydrogenase	View
5THK	G	265	Putative dehydrogenase	View
5THK	H	256	Putative dehydrogenase	View
5U2W	A	246	Short chain dehydrogenase	View
5U2W	B	245	Short chain dehydrogenase	View
5U2W	C	245	Short chain dehydrogenase	View
5U2W	D	245	Short chain dehydrogenase	View
1AE1	A	245	Tropinone reductase 1	View
1E7W	A	267	Pteridine reductase 1	View
1MXH	A	248	Putative pteridine reductase 2	View
1P33	A	267	Pteridine reductase 1	View
2JAH	A	239	Clavaldehyde dehydrogenase	View
2P91	A	254	Enoyl-[acyl-carrier-protein] reductase [NADH] FabI	View

Topology view of query protein [ProLego results]

d3pgxa_

Topology Information