Protein Detail

Protein Information

PDBId & Chain	3GRC : C
Molecule	PAS/PAC sensor hybrid histidine kinase
Residues	121
Sequence
SSE Sequence^*(9)	`EHEHHEHEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.Ca.0.Hp.0.0.Ca.Ca-Ep.0.0.0.0.Ep.0-0.0.0.0.0.Ca-0.0.0.0.0-0.0.0.0-0.0.0-0.0-Ca`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3GRC_C

Protein Id: 3GRC_C

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3GRC_C

Protein Id: 3GRC_C

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EHH	0.Hp-0	False	2ZSI:B, 3CS5:A, 3CS5:B, 3CS5:D, 4EFA:G, 4ICG:A, 4ICG:B, 5APP:A, 1LGH:A, 1M1J:A, 2F60:K,	d1lgha_, d1qo8a1, 1k1fD00, 1lghA00, 1m1jA00,
3	HHE	Hp.0-0	False	3HLS:E, 3HLS:F, 3HLS:H, 3MP7:B, 3MQ7:B, 3MQ7:C, 3MQ7:D, 3MQ7:E, 5ED9:B, 2BL0:A,	d3ag3i_, 1v54I00,
4	EHHE	0.Hp.0-0.0-0	False
4	HHEH	Hp.0.0-0.0-0	False	3B09:A, 3HFH:A,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3GRC	A	121	PAS/PAC sensor hybrid histidine kinase	View
3GRC	D	121	PAS/PAC sensor hybrid histidine kinase	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3GRC	B	120	PAS/PAC sensor hybrid histidine kinase	View
3HDV	A	117	Response regulator	View
3HDV	B	123	Response regulator	View
3HDV	C	118	Response regulator	View
3HDV	D	114	Response regulator	View
3JVI	A	156	Protein tyrosine phosphatase, putative	View
4EGS	A	147	Ribose 5-phosphate isomerase RpiB	View
4LRQ	A	148	Phosphotyrosine protein phosphatase	View
4LRQ	B	150	Phosphotyrosine protein phosphatase	View
4LRQ	C	149	Phosphotyrosine protein phosphatase	View
4LRQ	D	148	Phosphotyrosine protein phosphatase	View
5JNT	A	154	Low molecular weight phosphotyrosine protein phosphatase	View
5JNU	A	153	Low molecular weight phosphotyrosine protein phosphatase	View
5JNU	B	153	Low molecular weight phosphotyrosine protein phosphatase	View
5JNV	A	154	Low molecular weight phosphotyrosine protein phosphatase	View
1JF8	A	130	Protein ArsC	View
1JL3	A	137	Protein ArsC	View
1T1J	A	119	Uncharacterized protein	View
1U2P	A	156	Probable low molecular weight protein-tyrosine-phosphatase	View
1XWW	A	157	Low molecular weight phosphotyrosine protein phosphatase	View
2CWD	A	150	Low molecular weight phosphotyrosine protein phosphatase	View
2FWH	A	117	Thiol:disulfide interchange protein DsbD	View
2P4U	A	153	Low molecular weight phosphotyrosine protein phosphatase	View
2PLN	A	114	Response regulator	View
2WMY	A	143	Putative acid phosphatase Wzb	View

Topology view of query protein [ProLego results]

3GRC : C

Topology Information