Protein Detail

Protein Information

PDBId & Chain	3DSS : B
Molecule	Geranylgeranyl transferase type-2 subunit beta
Residues	327
Sequence
SSE Sequence^*(13)	`HHHHHHHHHHHHH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ha.Ha.Ha.Ha.Ha.Ha.Ha.Ha.Ha.Ha.Ha.0-0.Hp.0.Hp.0.Hp.0.Hp.0.Hp.0-0.0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0-0.0.0.0.0.0.0-0.0.0.0.0.0-0.0.0.0.0-0.0.0.Hr-0.Hp.0-Ha.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3DSS_B

Protein Id: 3DSS_B

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3DSS_B

Protein Id: 3DSS_B

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HHH	Ha.Ha-0	True	3RKO:A, 3RKO:E, 3RKO:G, 3RKO:K, 3SHG:B, 3THF:A, 3THF:B, 3U0C:A, 3U0C:B, 3ZE3:E, 4ADZ:A, 4ADZ:B, 4RP3:A, 4RP3:B, 4XA3:A, 5EU0:B, 5FMN:A, 5FMN:B, 5LCY:A, 5LCY:B, 5LCY:C, 5LCY:D, 5LSI:D, 5SZH:A, 5SZJ:B, 1UPT:B, 2HH7:A, 2P64:A,	d1t50a_, d1uptb_, d2vv5a3, 1t50A00, 1uptF00,
3	HHH	Ha.Ha-Hp	True	2WY8:Q, 2XF7:A, 2XF7:B, 2XF7:C, 2XF7:D, 2XF7:E, 2XF7:F, 2XVT:A, 2XVT:B, 2XVT:C, 2XVT:D, 2XVT:E, 2XVT:F, 3A8Y:C, 3A8Y:D, 3BBZ:A, 3BBZ:B, 3EAB:A, 3EAB:B, 3EAB:C, 3EAB:D, 3EAB:E, 3EAB:F, 3GI7:A, 3GI7:B, 3GN4:A, 3L8R:A, 3L8R:B, 3L8R:C, 3L8R:D, 3L8R:E, 3L8R:F, 3L8R:G, 3L8R:H, 3LOF:A, 3LOF:B, 3LOF:C, 3LOF:D, 3LOF:E, 3LOF:F, 3MQ1:A, 3MQ1:B, 3MQ1:C, 3MQ1:D, 3MQ1:E, 3MQ1:F, 3MXZ:A, 3MZW:B, 3OVU:A, 3PH0:C, 3PH0:D, 3RGU:A, 3RGU:B, 3RGU:C, 3RGU:D, 3T47:A, 3UUL:A, 3UUL:B, 3UUN:A, 3UUN:B, 3ZE3:B, 3ZE3:C, 3ZE3:F, 4A5X:A, 4A5X:B, 4CC9:B, 4CQI:A, 4FM3:A, 4FM3:B, 4FM3:C, 4FM3:D, 4FZP:A, 4FZP:B, 4H10:A, 4HKZ:H, 4HWC:A, 4HWC:B, 4HWC:C, 4HWC:D, 4HWC:E, 4HWC:F, 4HWD:A, 4HWD:B, 4HWD:D, 4HWH:A, 4HWH:B, 4HWH:C, 4HWH:D, 4HWH:E, 4K12:B, 4KBQ:C, 4KBQ:D, 4MBQ:A, 4MBQ:B, 4MBQ:C, 4MBQ:D, 4MBQ:E, 4MBQ:F, 4NPD:A, 4NTW:C, 4PS2:A, 4TX5:A, 4TX5:B, 4U7I:A, 4U7Y:A, 4UI1:C, 4UI1:D, 4Z8L:E, 4ZNC:A, 4ZNC:B, 4ZNC:C, 5DJT:B, 5FVK:A, 5FVK:B, 5JSN:B, 5JSN:D, 5LB7:B, 1EZ3:A, 1LJ2:A, 1LP1:A, 1WRD:A, 1Z8U:A, 2C5K:T, 2E2A:A, 2ERL:A, 2FCW:A, 2FZT:A, 2GOM:A, 2J5Y:A, 2NOJ:B, 2V6Y:A, 2W2U:A, 3LF9:A, 3LG7:A, 3LHP:S, 3QWO:C, 3S1K:A, 4IOI:H, 4L8I:A, 4OYD:B, 5DJU:B, 5EFW:B, 5GNA:A, 5J0L:A, 5JSB:B,	d1chua1, d1cuna2, d1ez3a_, d1fpoa2, d1g73a_, d1gpja1, d1gvna_, d1hcia4, d1hf8a1, d1iura_, d1lvfa_, d1m62a_, d1nrea_, d1nu9c1, d1o3xa_, d1o7d.1, d1qsda_, d1r4ga_, d1s35a1, d1s35a2, d1u5pa1, d1u5pa2, d1uura1, d1vcta1, d1wfda_, d1wrda1, d1x4oa1, d1x4pa1, d1x9ba_, d1xvha2, d1z8ua_, d2cpta1, d2crba1, d2e2aa_, d2erla_, d2fcwa1, d2fzta1, d2goma1, d2j5ya_, d2pmra1, d2qalt1, d2uubt1, d3bvua1, d3l8ra_, d3ldqb_, d3qwoc_, 1deeG00, 1deeG00, 1ez3A00, 1g73A00, 1gvnC00, 1hciA04, 1lj2A00, 1lp1B00, 1lreA00, 1lvfB00, 1m62A00, 1o3xA00, 1qsdA00, 1r73A00, 1t6oA00, 1wfdA00, 1x9bA00, 2e2aA00, 2erlA00, 2vqeT00,
3	HHH	Ha.0-0	False	3BPJ:A, 3BPJ:B, 3BPJ:C, 3BPJ:D, 3MTU:E, 3MTU:F, 4CLQ:B, 4HFX:A, 4IAO:C, 4IAO:D, 4OM3:A, 4X86:A, 4YTW:A, 4YTW:C, 5FD9:A, 1YKH:B, 2B9C:A,	d1ykhb1, d2bskb1,
4	HHHH	Ha.Ha.Ha-0.Hp-0	True	1HXI:A, 4JW2:A,	d1hxia_, d1k1xa1, 1hxiA00,
4	HHHH	Ha.Ha.0-Hp.0-0	False	3GN4:E, 3UB0:C, 5F22:A,
5	HHHHH	Ha.Ha.Ha.Ha-Hp.0.Hp-0.0-0	True	3BEE:A, 3BEE:B, 3EDU:A, 3MA5:A, 3MA5:B, 3MA5:C, 3PDY:A, 3PDY:B, 1CUN:A, 1NA3:A, 1S35:A, 1U5P:A, 2VKJ:A,
6	HHHHHH	Ha.Ha.Ha.Ha.Ha-0.Hp.0.Hp-0.0.0-0.0-0	False	3O48:A,
6	HHHHHH	Ha.Ha.Ha.Ha.Ha-Hp.0.Hp.0-0.0.0-0.0-0	False	4J8E:A, 4J8E:B, 3KD7:A, 5FZS:A,
7	HHHHHHH	Ha.Ha.Ha.Ha.Ha.Ha-Hp.0.Hp.0.Hp-0.0.0.0-0.0.0-0.0-0	True	2XCB:A, 2XCB:B, 2XEV:C, 3FFL:A, 3FFL:B, 3FFL:C, 3FFL:D, 3Q4A:B, 3SZ7:A, 3UPV:A, 4APO:A, 4APO:B, 4CGV:A, 4CGV:B, 4CGV:C, 4CGV:D, 4GCO:A, 4H7Y:A, 4H7Y:D, 4KBQ:A, 4KBQ:B, 5AN3:A, 5AN3:B, 5AN3:C, 5L0Y:B, 5L0Y:D, 5L0Y:E, 1A17:A, 1ELW:A, 2HR2:A, 2P58:C, 2UWJ:G, 2VYI:A, 3Q49:B, 5H79:C, 5HRZ:A,	d1a17a_, d1elra_, d1elwa_, d1p5qa1, d2hr2a1, 1a17A00, 1elrA00, 1elwA00,
8	HHHHHHHH	Ha.Ha.Ha.Ha.Ha.Ha.Ha-0.Hp.0.Hp.0.Hp-0.0.0.0.0-0.0.0.0-0.0.0-0.0-0	True	3EFZ:A, 3EFZ:C, 2E2E:A,	d3efza1,
8	HHHHHHHH	Ha.Ha.Ha.Ha.Ha.Ha.Ha-Hp.0.Hp.0.Hp.0-0.0.0.0.0-0.0.0.0-0.0.0-0.0-0	False	2HYZ:A,
9	HHHHHHHHH	Ha.Ha.Ha.Ha.Ha.Ha.Ha.Ha-Hp.0.Hp.0.Hp.0.Hp-0.0.0.0.0.0-0.0.0.0.0-0.0.0.0-0.0.0-0.0-0	False	4NQ0:A,
10	HHHHHHHHHH	Ha.Ha.Ha.Ha.Ha.Ha.Ha.Ha.Ha-Hp.0.Hp.0.Hp.0.Hp.0-0.0.0.0.0.0.0-0.0.0.0.0.0-0.0.0.0.0-0.0.0.0-0.0.0-0.0-0	False	2YHC:A, 3VTX:B, 4Y6W:A,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
d3dssb_	--	327	u'Geranylgeranyl transferase type-2 subunit beta'	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3B95	B	225	Histone-lysine N-methyltransferase EHMT1	View
3BJB	B	177	Probable transcriptional regulator, TetR family protein	View
3BJX	B	288	Halocarboxylic acid dehalogenase DehI	View
3C07	A	216	Putative tetR-family transcriptional regulator	View
3C07	B	210	Putative tetR-family transcriptional regulator	View
3CCG	A	184	HD superfamily hydrolase, yqeK B.subtilis ortholog	View
3CDL	B	183	Transcriptional regulator AefR	View
3CXN	A	201	Urease accessory protein UreF	View
3CXN	B	203	Urease accessory protein UreF	View
3CXN	C	198	Urease accessory protein UreF	View
3DPJ	C	187	Transcription regulator, TetR family	View
3DPJ	D	184	Transcription regulator, TetR family	View
3DPJ	E	186	Transcription regulator, TetR family	View
3DPJ	G	186	Transcription regulator, TetR family	View
3DPJ	H	182	Transcription regulator, TetR family	View
3E0S	A	296	Uncharacterized protein	View
3FHF	A	212	N-glycosylase/DNA lyase	View
3GE3	B	304	Toluene-4-monooxygenase system protein E	View
3I5Q	A	248	Nucleoporin NUP170	View
3I5Q	B	248	Nucleoporin NUP170	View
3KCU	B	252	Probable formate transporter 1	View
3KCU	E	249	Probable formate transporter 1	View
3KRA	C	271	Gpp synthase small subunit	View
3KZ9	A	197	VvpR	View
3KZ9	B	198	VvpR	View
3KZ9	C	199	VvpR	View
3KZ9	D	195	VvpR	View
3LGB	A	176	DNA primase large subunit	View
3LGB	B	188	DNA primase large subunit	View
3M73	A	313	Tellurite resistance protein TehA homolog	View
3MVU	A	219	Transcriptional activator, TenA family	View
3N37	A	284	Ribonucleoside-diphosphate reductase 2 subunit beta	View
3N3A	A	282	Ribonucleoside-diphosphate reductase 2 subunit beta	View
3N3A	B	282	Ribonucleoside-diphosphate reductase 2 subunit beta	View
3N5N	X	271	Adenine DNA glycosylase	View
3N5N	Y	272	Adenine DNA glycosylase	View
3NF1	A	283	Kinesin light chain 1	View
3NNR	A	199	Transcriptional regulator, TetR family	View
3NO6	A	224	Aminopyrimidine aminohydrolase	View
3NO6	B	215	Aminopyrimidine aminohydrolase	View
3NO6	C	215	Aminopyrimidine aminohydrolase	View
3NO6	D	216	Aminopyrimidine aminohydrolase	View
3OLJ	A	286	Ribonucleoside-diphosphate reductase subunit M2	View
3OLJ	B	286	Ribonucleoside-diphosphate reductase subunit M2	View
3OLJ	C	286	Ribonucleoside-diphosphate reductase subunit M2	View
3OLJ	D	286	Ribonucleoside-diphosphate reductase subunit M2	View
3OQL	A	233	Uncharacterized protein	View
3OQL	B	234	Uncharacterized protein	View
3OQL	D	234	Uncharacterized protein	View
3OV9	A	245	Nucleoprotein	View
3OV9	B	244	Nucleoprotein	View
3OV9	C	244	Nucleoprotein	View
3QKX	B	176	Uncharacterized HTH-type transcriptional regulator HI_0893	View
3QML	C	262	Nucleotide exchange factor SIL1	View
3RJV	A	205	Uncharacterized protein	View
3RMR	A	233	Avirulence protein	View
3RMR	B	228	Avirulence protein	View
3RMR	C	232	Avirulence protein	View
3S6I	A	206	DNA-3-methyladenine glycosylase 1	View
3S6I	D	207	DNA-3-methyladenine glycosylase 1	View
3URZ	A	196	Tetratricopeptide repeat protein	View
3URZ	B	200	Tetratricopeptide repeat protein	View
3USW	A	212	Flagellar motor switch protein FliG	View
3WOZ	A	219	CLIP-associating protein 2	View
3WOZ	B	223	CLIP-associating protein 2	View
3WOZ	C	223	CLIP-associating protein 2	View
3WOZ	D	215	CLIP-associating protein 2	View
4B21	A	208	Probable DNA-3-methyladenine glycosylase 2	View
4BGO	B	251	Uncharacterized protein	View
4BMO	A	290	Ribonucleoside-diphosphate reductase subunit beta	View
4CSF	A	249	Nucleoprotein	View
4CSF	C	250	Nucleoprotein	View
4CSF	E	249	Nucleoprotein	View
4CSF	G	249	Nucleoprotein	View
4CSF	J	249	Nucleoprotein	View
4CSF	L	250	Nucleoprotein	View
4CSF	N	249	Nucleoprotein	View
4CSF	P	249	Nucleoprotein	View
4CSF	Q	249	Nucleoprotein	View
4CSF	R	248	Nucleoprotein	View
4CSF	S	249	Nucleoprotein	View
4CSF	T	250	Nucleoprotein	View
4CSF	U	247	Nucleoprotein	View
4CSF	V	249	Nucleoprotein	View
4CSF	W	250	Nucleoprotein	View
4CSF	X	249	Nucleoprotein	View
4DNK	A	225	14-3-3 protein beta/alpha	View
4EOJ	B	257	Cyclin-A2	View
4EOJ	D	256	Cyclin-A2	View
4F62	A	267	Geranyltranstransferase	View
4FFB	C	231	Protein STU2	View
4FHR	B	208	Flagellar motor switch protein FliG	View
4FN6	A	224	Aminopyrimidine aminohydrolase	View
4FN6	B	224	Aminopyrimidine aminohydrolase	View
4G3A	A	220	CLIP-associating protein	View
4G3A	B	227	CLIP-associating protein	View
4GYV	F	212	FERM, RhoGEF and pleckstrin domain-containing protein 2	View
4J4R	A	248	Nucleocapsid protein	View
4M1H	B	336	Ribonucleoside-diphosphate reductase subunit beta	View
4M1H	C	331	Ribonucleoside-diphosphate reductase subunit beta	View
4N83	A	285	Ribonucleoside-diphosphate reductase subunit beta	View
4N83	B	284	Ribonucleoside-diphosphate reductase subunit beta	View
4N83	C	284	Ribonucleoside-diphosphate reductase subunit beta	View
4N83	D	284	Ribonucleoside-diphosphate reductase subunit beta	View
4N83	E	284	Ribonucleoside-diphosphate reductase subunit beta	View
4N83	F	284	Ribonucleoside-diphosphate reductase subunit beta	View
4N83	G	283	Ribonucleoside-diphosphate reductase subunit beta	View
4N83	H	283	Ribonucleoside-diphosphate reductase subunit beta	View
4NUU	A	282	Duffy receptor	View
4NUU	B	292	Duffy receptor	View
4OMG	A	280	Cyclooctat-9-en-7-ol synthase	View
4OMG	B	279	Cyclooctat-9-en-7-ol synthase	View
4P29	A	214	Penicillin-binding protein activator LpoA	View
4P29	B	213	Penicillin-binding protein activator LpoA	View
4Q88	A	340	Uncharacterized protein	View
4Q88	B	338	Uncharacterized protein	View
4QMI	A	228	Cytoskeleton-associated protein 5	View
4R0G	A	253	Uncharacterized protein	View
4R0G	B	240	Uncharacterized protein	View
4R0G	C	252	Uncharacterized protein	View
4R0G	D	250	Uncharacterized protein	View
4RDQ	A	366	Uncharacterized protein	View
4RDQ	B	366	Uncharacterized protein	View
4RDQ	C	366	Uncharacterized protein	View
4RDQ	D	366	Uncharacterized protein	View
4RDQ	E	366	Uncharacterized protein	View
4U3J	C	241	Protein STU2	View
4U6U	B	282	KLLA0F03685p	View
4UNF	A	236	Endonuclease III	View
4UWX	A	234	Protein diaphanous homolog 1	View
4UWX	B	230	Protein diaphanous homolog 1	View
4WX0	A	256	TENA/THI-4 family protein	View
4WX0	B	255	TENA/THI-4 family protein	View
4X82	B	217	Zinc transporter ZIP4	View
4XLY	A	263	Uncharacterized protein blr2150	View
4XLY	B	260	Uncharacterized protein blr2150	View
4YXP	A	268	mRNA export factor	View
4YXP	B	271	mRNA export factor	View
4Z35	A	382	Lysophosphatidic acid receptor 1	View
4ZMI	A	235	Telomere length regulator taz1	View
5AYP	B	264	Farnesyl diphosphate synthase	View
5B00	B	261	MoeN5	View
5B00	C	261	MoeN5	View
5EFQ	B	242	Cyclin-K	View
5ERN	B	287	Fusicoccadiene synthase	View
5H28	A	263	Oxysterol-binding protein homolog 1	View
5H2A	A	271	KLLA0C04147p	View
5H2A	B	257	KLLA0C04147p	View
5H5M	A	358	Alpha-catenin-like protein hmp-1	View
5I20	D	280	Uncharacterized protein	View
5I20	F	219	Uncharacterized protein	View
5JJO	A	260	Uncharacterized protein	View
5JKP	A	264	Uncharacterized protein	View
5LQF	B	264	G2/mitotic-specific cyclin-B1	View
5LQF	E	264	G2/mitotic-specific cyclin-B1	View
5LWE	A	275	C-C chemokine receptor type 9	View
5TW1	F	302	RNA polymerase sigma factor SigA	View
1D2T	A	222	Acid phosphatase	View
1DI1	A	290	Aristolochene synthase	View
1OFC	X	267	Chromatin-remodeling complex ATPase chain Iswi	View
1OT8	A	209	Neurogenic locus Notch protein	View
1R2F	A	283	Ribonucleoside-diphosphate reductase 2 subunit beta	View
1T72	A	205	Phosphate-specific transport system accessory protein PhoU homolog	View
1UDD	A	215	218aa long hypothetical transcriptional regulator	View
1XG7	A	245	N-glycosylase/DNA lyase	View
1Z3X	A	234	Ycf53 protein	View
2B6C	A	209	Uncharacterized protein	View
2I2O	A	206	MIF4G domain-containing protein B	View
2I6H	A	176	Uncharacterized protein	View
2ID6	A	194	Transcriptional regulator, TetR family	View
2IJE	S	237	Ras-specific guanine nucleotide-releasing factor 1	View
2NW8	A	266	Tryptophan 2,3-dioxygenase	View
2O8S	A	226	Uncharacterized protein	View
2OF7	A	185	Putative tetR-family transcriptional regulator	View
2QIB	A	217	Putative tetR-family transcriptional regulator	View
2QK1	A	240	Protein STU2	View
2QK2	A	236	Mini spindles, isoform C	View
2RCC	A	302	Ribonucleoside-diphosphate reductase subunit beta	View
2VQ2	A	220	Putative fimbrial biogenesis and twitching motility protein	View
2W96	A	249	G1/S-specific cyclin-D1	View

Topology view of query protein [ProLego results]

3DSS : B

Topology Information