Protein Detail

Protein Information

PDBId & Chain	2P5K : A
Molecule	Arginine repressor
Residues	63
Sequence
SSE Sequence^*(5)	`HHHEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Hr.Hr.0.Ea-Hr.0.0-0.Cp-Ca`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 2P5K_A

Protein Id: 2P5K_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 2P5K_A

Protein Id: 2P5K_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HHH	Hr.Hr-Hr	True	2XVC:A, 3C57:B, 3E7L:A, 3E7L:C, 3E7L:D, 3FGH:A, 3I71:A, 3SJM:A, 3SJM:B, 3U2B:C, 4A3N:A, 4D6K:A, 4D6K:B, 4D6K:C, 4D6K:D, 4D6K:E, 4L5E:A, 4QR9:A, 4QR9:B, 4S2Q:D, 4X86:B, 4Y60:C, 5DUK:A, 5DUK:B, 5TW1:E, 1GUU:A, 1GVD:A, 1L0O:C, 1UJ8:A, 2CJJ:A, 2HDZ:A, 2OOA:A,	d1a6qa1, d1efub3, d1fexa_, d1g2ha_, d1gv2a2, d1gvda_, d1hlva2, d1iioa_, d1irza_, d1iufa2, d1j3da_, d1k78a2, d1l0oc_, d1l6ja1, d1lbua1, d1m1eb_, d1ofcx1, d1qzea1, d1rp3a1, d1rq6a_, d1smyf1, d1ttea1, d1u78a2, d1uj8a1, d1uxca_, d1uzca_, d1veka_, d1w0ua_, d1wgxa_, d1wiva_, d1x58a1, d1xb2b1, d1xc5a1, d2cfxa1, d2cg4a1, d2cjja1, d2cosa1, d2cp8a1, d2cqra1, d2crga1, d2crna1, d2cyya1, d2daha1, d2diia1, d2dkla1, d2doda1, d2hdza_, d2lefa_, d2ve8a_, d4a3na_, 1bbyA00, 1bbyA00, 1dp3A00, 1efuB01, 1fexA00, 1g2hA00, 1gt0D00, 1gvdA00, 1hsmA00, 1ifyA00, 1iioA00, 1irzA00, 1iv6A00, 1k78I00, 1l0oC00, 1l8yA00, 1rq6A00, 1uxdA00, 1uzcA00, 1w0tA00, 1w0uA00, 1wivA00, 2lefA00,
3	HHE	Hr.0-0	True	2ZXX:D, 2ZXX:E, 3H87:D, 3KXE:C, 3KXE:D, 3PN7:D, 4FXE:A, 4FXE:B, 4J2N:B, 4J2N:D, 4QIC:B, 4QIC:D, 4Z8L:C, 5CEG:A, 5CEG:C, 1HWT:C, 1OV9:A, 1T0F:C, 1ZX3:A, 2BSQ:E, 2ER8:A, 5VJI:C, 5WWO:C, 5X3T:A,	d1ov9a_, d1y9ba1, d2bska1, d2bsqe1, 1bpeA01, 1bpeA01, 1uklC00,
3	HEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
4	HHHE	Hr.Hr.0-Hr.0-0	True	4C2M:J, 4C2M:Y, 4F2L:A, 1OR7:C, 1TWF:J,	d1or7c_, d1qpza1, d1twfj_, 1efaA01, 1twfJ00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
d1aoya_	--	78	u'Arginine repressor'	View
d2p5ka1	--	63	u'Arginine repressor'	View
1aoyA00	--	78	Arginine repressor	View
1aoyA00	--	78	Arginine repressor	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3CO6	C	91	Forkhead box protein O1	View
3CUQ	D	97	Vacuolar protein-sorting-associated protein 25	View
3H0L	C	91	Glutamyl-tRNA(Gln) amidotransferase subunit C	View
3H0L	F	91	Glutamyl-tRNA(Gln) amidotransferase subunit C	View
3H0L	I	91	Glutamyl-tRNA(Gln) amidotransferase subunit C	View
3H0L	L	91	Glutamyl-tRNA(Gln) amidotransferase subunit C	View
3H0L	O	91	Glutamyl-tRNA(Gln) amidotransferase subunit C	View
3H0L	R	91	Glutamyl-tRNA(Gln) amidotransferase subunit C	View
3H0L	U	91	Glutamyl-tRNA(Gln) amidotransferase subunit C	View
3H0L	X	91	Glutamyl-tRNA(Gln) amidotransferase subunit C	View
3IP4	C	92	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	View
3KFU	G	86	Glutamyl-tRNA(Gln) amidotransferase subunit C	View
3KFU	J	83	Glutamyl-tRNA(Gln) amidotransferase subunit C	View
3L2C	A	85	Forkhead box protein O4	View
3MHS	E	86	SAGA-associated factor 73	View
3QRF	G	82	Forkhead box protein P3	View
3QRF	I	82	Forkhead box protein P3	View
3REA	C	125	Protein Nef	View
3S93	A	80	Tudor domain-containing protein 5	View
3S93	B	81	Tudor domain-containing protein 5	View
4AWX	B	63	Ferrous iron transport protein C	View
4C2M	F	100	DNA-directed RNA polymerases I, II, and III subunit RPABC2	View
4C2M	U	100	DNA-directed RNA polymerases I, II, and III subunit RPABC2	View
4FUR	D	100	Urease subunit gamma 2	View
4FUR	E	100	Urease subunit gamma 2	View
4FUR	F	100	Urease subunit gamma 2	View
4KT5	C	88	Uncharacterized protein	View
4LB6	B	63	Z-DNA binding protein kinase	View
4U0Y	A	75	HTH-type transcriptional repressor YvoA	View
4U0Y	B	75	HTH-type transcriptional repressor YvoA	View
4U0Y	C	75	HTH-type transcriptional repressor YvoA	View
4U0Y	D	74	HTH-type transcriptional repressor YvoA	View
4WCG	A	61	Putative uncharacterized protein	View
4YII	A	72	Anaphase-promoting complex subunit 2	View
5D4S	A	70	Arabinose metabolism transcriptional repressor	View
5D4S	B	83	Arabinose metabolism transcriptional repressor	View
5KVR	A	77	Pyruvate dehydrogenase complex repressor	View
1QBJ	A	65	Double-stranded RNA-specific adenosine deaminase	View
1VTN	C	102	Hepatocyte nuclear factor 3-gamma	View
1Y0U	A	86	Arsenical resistance operon repressor, putative	View
2UZK	A	97	Forkhead box protein O3	View

Topology view of query protein [ProLego results]

2P5K : A

Topology Information