Protein Detail

Protein Information

PDBId & Chain	2FKB : A
Molecule	Uncharacterized Nudix hydrolase YfcD
Residues	157
Sequence
SSE Sequence^*(10)	`EEEEHEEEHH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.0.Ea.Cp.Cp.Ea.0.Ca.0-Ea.0.Cp.0.Cp.0.0.0-0.0.0.0.0.0.Cp-0.0.Ep.Ea.0.Ca-0.0.Ep.Cp.0-0.0.0.0-0.0.Cp-0.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 2FKB_A

Protein Id: 2FKB_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 2FKB_A

Protein Id: 2FKB_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	Ea.0-Ea	False	4C2M:1, 4C2M:L, 4KSN:A, 4SGB:I, 6RXN:A, 2DSX:A, 2RDV:A, 2V3B:B,	d1lkoa2, d1pfva3, d1yuza2, d1zina2, d2cona1, d4sgbi_, 2dsxA00, 4sgbI00,
3	EEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEH	Ea.Cp-Cp	False	3PIS:A, 3PIS:D,	d1wiga2, d1x3ha2, d2dara1,
3	HEE	Cp.Ea-Cp	False	4HR6:A,
3	EEE	Ea.0-0	True	2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A,	d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
4	EEEE	Ea.0.Ea-Ea.0-0	False		d1h8pa1, d1pjua2,
4	EEEH	0.Ea.Cp-0.Cp-0	False		d1fbva4,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
d2fkba1	--	157	u'Uncharacterized Nudix hydrolase YfcD'	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3F13	A	142	Putative uncharacterized protein	View
3F13	B	145	Putative uncharacterized protein	View
3GRN	A	138	MutT related protein	View
3GRN	B	137	MutT related protein	View
3GWY	A	121	Putative CTP pyrophosphohydrolase	View
3I7U	A	133	AP4A hydrolase	View
3I7U	B	133	AP4A hydrolase	View
3I7U	C	134	AP4A hydrolase	View
3I7U	D	134	AP4A hydrolase	View
3PFS	A	134	Bromodomain and PHD finger-containing protein 3	View
3PFS	B	130	Bromodomain and PHD finger-containing protein 3	View
3Q91	B	131	Uridine diphosphate glucose pyrophosphatase	View
3SON	A	144	Hypothetical NUDIX hydrolase	View
3SON	B	143	Hypothetical NUDIX hydrolase	View
4HVY	A	135	8-oxo-dGDP phosphatase NUDT18	View
4ICK	A	147	Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical]	View
4ICK	B	143	Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical]	View
4KG3	A	138	mRNA-decapping enzyme subunit 2	View
4KG3	B	145	mRNA-decapping enzyme subunit 2	View
4KG3	C	144	mRNA-decapping enzyme subunit 2	View
4MPO	A	145	Uncharacterized protein	View
4MPO	B	148	Uncharacterized protein	View
4MPO	C	145	Uncharacterized protein	View
4MPO	D	145	Uncharacterized protein	View
4MPO	E	144	Uncharacterized protein	View
4MPO	F	142	Uncharacterized protein	View
4MPO	G	136	Uncharacterized protein	View
4MPO	H	144	Uncharacterized protein	View
4NFW	A	150	Putative Nudix hydrolase ymfB	View
4NFW	B	150	Putative Nudix hydrolase ymfB	View
4NFW	C	150	Putative Nudix hydrolase ymfB	View
4NFW	E	150	Putative Nudix hydrolase ymfB	View
4NFW	F	153	Putative Nudix hydrolase ymfB	View
4NFW	G	150	Putative Nudix hydrolase ymfB	View
4NFW	H	150	Putative Nudix hydrolase ymfB	View
4NFW	J	152	Putative Nudix hydrolase ymfB	View
4NFW	K	150	Putative Nudix hydrolase ymfB	View
4PDC	E	150	CPXV018 protein	View
4PDC	F	150	CPXV018 protein	View
4QXZ	A	146	Uncharacterized protein	View
4QXZ	B	143	Uncharacterized protein	View
5C6S	A	126	Peregrin	View
1KTG	A	137	Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical]	View
1SJY	A	154	MutT/nudix family protein	View
1VCD	A	126	Diadenosine hexaphosphate hydrolase	View

Topology view of query protein [ProLego results]

2FKB : A

Topology Information