Protein Detail

Protein Information

PDBId & Chain	1XHO : A
Molecule	Chorismate mutase
Residues	106
Sequence
SSE Sequence^*(6)	`EHEHEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.0.0.0.0-0.Hr.Ea.0-0.Cp.0-Ea.0-Ep`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1XHO_A

Protein Id: 1XHO_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1XHO_A

Protein Id: 1XHO_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HEH	0.0-Hr	False	4EOT:A, 4FL4:J, 1Q7L:B,	d2auwa1,
3	EHE	0.0-Ea	True	3S2R:A, 3S2R:B, 4EZF:A, 4EZF:B, 4OOA:A, 4OOA:B, 4OOA:C, 4OOA:D, 4OOA:E, 4OOA:F, 4R10:B,	d1clvi_, d1k91a_, 2o9uX00,
4	EHEE	0.0.0-Ea.0-0	True	3D2Q:B, 3IFQ:C, 3IFQ:D,	d2j01x1,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2Z7C	A	89	DNA/RNA-binding protein Alba	View
2Z7C	B	89	DNA/RNA-binding protein Alba	View
2Z7C	C	89	DNA/RNA-binding protein Alba	View
2Z7C	D	92	DNA/RNA-binding protein Alba	View
2ZJR	Q	93	50S ribosomal protein L23	View
2ZQE	A	80	Endonuclease MutS2	View
3FAU	A	71	NEDD4-binding protein 2	View
3FAU	C	77	NEDD4-binding protein 2	View
3FAU	D	79	NEDD4-binding protein 2	View
3HZ7	A	71	Putative uncharacterized protein	View
3LVJ	C	77	Sulfurtransferase TusA	View
3LVJ	D	77	Sulfurtransferase TusA	View
3OW2	W	82	50S ribosomal protein L31e	View
3P04	A	75	Uncharacterized BCR	View
3TOE	A	86	DNA/RNA-binding protein Alba	View
3TOE	B	86	DNA/RNA-binding protein Alba	View
3ZIE	A	82	Uncharacterized protein	View
3ZIE	B	84	Uncharacterized protein	View
3ZIE	C	82	Uncharacterized protein	View
3ZIE	D	81	Uncharacterized protein	View
3ZIE	E	82	Uncharacterized protein	View
3ZIE	F	83	Uncharacterized protein	View
3ZIH	A	79	Cell division protein SepF	View
3ZIH	B	80	Cell division protein SepF	View
4EVU	A	62	Putative periplasmic protein	View
4EVU	B	65	Putative periplasmic protein	View
4OD6	A	82	Endonuclease MutS2	View
4Z9E	A	85	DNA/RNA-binding protein Alba	View
4Z9E	B	85	DNA/RNA-binding protein Alba	View
4Z9E	C	85	DNA/RNA-binding protein Alba	View
4Z9E	D	85	DNA/RNA-binding protein Alba	View
1NFJ	A	87	DNA/RNA-binding protein Alba 2	View
1NH9	A	80	DNA/RNA-binding protein Alba	View
1TIG	A	88	Translation initiation factor IF-3	View
1VQO	X	82	50S ribosomal protein L31e	View
2BKY	A	89	DNA/RNA-binding protein Alba 1	View
2BKY	X	86	DNA/RNA-binding protein Alba 2	View
2H9U	A	101	DNA/RNA-binding protein Alba 2	View
3LVK	B	76	Sulfurtransferase TusA	View

Topology view of query protein [ProLego results]

1XHO : A

Topology Information