Protein Detail

Protein Information

PDBId & Chain	1QO3 : C
Molecule	T-cell surface glycoprotein YE1/48
Residues	128
Sequence
SSE Sequence^*(10)	`EEHEHEEEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ca.Ca.0.0.Ea.Ep.Ea.0-0.0.0.Ep.0.Ea.0.Ep-0.Cp.Ca.0.Cp.Ep.0-Ca.Ep.0.0.Cp.Ep-0.0.Cp.0.0-0.0.0.Ea-0.0.Cp-0.Ea-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1QO3_C

Protein Id: 1QO3_C

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1QO3_C

Protein Id: 1QO3_C

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEH	Ea.Ca-0	True	3OW2:T, 1VQO:U, 2PUY:A,	d1vq8u1, d1we9a_, d1wjva1, d2puya_, 1vq8U00,
3	HEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEE	Ea.Ep-Ea	False	4AR6:A, 1IRO:A, 1YK4:A, 5NW3:A,	d1yk4a_,
3	EEE	Ep.Ea-0	False	1I5K:A,
3	EEE	Ea.0-Ep	False		d2jdih2,
4	EEEE	Ea.Ep.Ea-Ea.0-Ep	False		1q38A00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
d1qo3c_	--	128	u'T-cell surface glycoprotein YE1/48'	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2XR6	A	130	CD209 antigen	View
2ZIB	A	130	Type II antifreeze protein	View
3BDW	B	116	NKG2-A/NKG2-B type II integral membrane protein	View
3BDW	D	116	NKG2-A/NKG2-B type II integral membrane protein	View
3FF9	A	115	Killer cell lectin-like receptor subfamily G member 1	View
3FF9	B	115	Killer cell lectin-like receptor subfamily G member 1	View
3G8K	A	127	Lectin-related NK cell receptor LY49L1	View
3G8K	B	127	Lectin-related NK cell receptor LY49L1	View
3HUP	A	121	Early activation antigen CD69	View
3HUP	B	118	Early activation antigen CD69	View
3RS1	A	122	C-type lectin domain family 2 member I	View
3RS1	B	122	C-type lectin domain family 2 member I	View
3VPP	A	121	C-type lectin domain family 9 member A	View
3VPP	B	122	C-type lectin domain family 9 member A	View
3VYK	A	128	Protein Clec4a4	View
3WH2	A	132	C-type lectin domain family 4 member E	View
3ZHG	A	132	CD209 antigen-like protein B	View
3ZHG	B	132	CD209 antigen-like protein B	View
3ZHG	C	132	CD209 antigen-like protein B	View
3ZHG	D	133	CD209 antigen-like protein B	View
4KZV	A	131	Uncharacterized protein	View
4KZV	B	127	Uncharacterized protein	View
4MTH	A	139	Regenerating islet-derived protein 3-alpha	View
4QKH	B	121	C-type lectin domain family 2 member D	View
4UWW	A	130	Struthiocalcin-1	View
4WQQ	A	141	Lectin CEL-I, N-acetyl-D-galactosamine-specific C-type	View
4WQQ	B	141	Lectin CEL-I, N-acetyl-D-galactosamine-specific C-type	View
4WQQ	C	141	Lectin CEL-I, N-acetyl-D-galactosamine-specific C-type	View
4WQQ	D	141	Lectin CEL-I, N-acetyl-D-galactosamine-specific C-type	View
5B1X	A	130	C-type lectin domain family 4 member A	View
5B1X	B	130	C-type lectin domain family 4 member A	View
5B1X	C	129	C-type lectin domain family 4 member A	View
5B1X	D	129	C-type lectin domain family 4 member A	View
5F2Q	A	134	C-type lectin BJcuL	View
5F2Q	B	135	C-type lectin BJcuL	View
5F2Q	C	135	C-type lectin BJcuL	View
5F2Q	D	134	C-type lectin BJcuL	View
5F2Q	E	135	C-type lectin BJcuL	View
5F2Q	F	134	C-type lectin BJcuL	View
5F2Q	G	134	C-type lectin BJcuL	View
5F2Q	H	134	C-type lectin BJcuL	View
5F2Q	I	135	C-type lectin BJcuL	View
5F2Q	J	134	C-type lectin BJcuL	View
1GZ2	A	138	Ovocleidin-17	View
1JZN	A	135	C-type lectin Cal	View
1QDD	A	144	Lithostathine-1-alpha	View
1TN3	A	137	Tetranectin	View
1XPH	A	139	C-type lectin domain family 4 member M	View
2OX8	A	129	Collectin-12	View
2OX9	A	130	Collectin-12	View
2PY2	A	127	Antifreeze protein type II	View
5JQ1	A	130	Asialoglycoprotein receptor 1	View

Topology view of query protein [ProLego results]

1QO3 : C

Topology Information