Protein Detail

Protein Information

PDBId & Chain	1OS6 : A
Molecule	PpcA
Residues	71
Sequence
SSE Sequence^*(7)	`EEHHHHH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Cp.0.0.Hp.0-0.0.0.0.0-0.0.0.0-0.0.0-0.Cp-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1OS6_A

Protein Id: 1OS6_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1OS6_A

Protein Id: 1OS6_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEH	Ea.Cp-0	False	5T59:C, 5T59:F, 5TDR:A, 2DS5:A,	d2ds5a_,
3	HHH	0.Hp-0	False	2ZSI:B, 3CS5:A, 3CS5:B, 3CS5:D, 4EFA:G, 4ICG:A, 4ICG:B, 5APP:A, 1LGH:A, 1M1J:A, 2F60:K,	d1lgha_, d1qo8a1, 1k1fD00, 1lghA00, 1m1jA00,
3	HHH	Hp.0-0	False	3HLS:E, 3HLS:F, 3HLS:H, 3MP7:B, 3MQ7:B, 3MQ7:C, 3MQ7:D, 3MQ7:E, 5ED9:B, 2BL0:A,	d3ag3i_, 1v54I00,
4	EEHH	Ea.Cp.0-0.0-0	False	4CMZ:C,
4	HHHH	0.0.Hp-0.0-0	True	3O0Z:A, 3O0Z:C, 4B0F:A, 4N5B:A, 4N5B:B, 4N5B:C, 4N5B:D, 4N5B:E, 4N5B:F, 4N5B:G, 4N5B:H,
4	HHHH	0.Hp.0-0.0-0	False
5	HHHHH	0.0.Hp.0-0.0.0-0.0-0	False		d1lnqa2, 1lnqA01,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
4OD9	A	97	Cathepsin D	View
4OD9	C	97	Cathepsin D	View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2ZHZ	C	172	Cob(I)alamin adenosyltransferase, putative	View
3BXU	B	71	Cytochrome c	View
3CI3	A	188	Cobalamin adenosyltransferase PduO-like protein	View
3CJL	A	80	Uncharacterized protein	View
3CJL	B	79	Uncharacterized protein	View
3HDF	A	133	Lysozyme	View
3HNW	A	124	Cell division protein ZapA	View
3HNW	B	124	Cell division protein ZapA	View
3KE4	A	172	Hypothetical Cytosolic Protein	View
3OR1	C	104	Sulfite reductase gama	View
3OR1	F	104	Sulfite reductase gama	View
3U5N	A	185	E3 ubiquitin-protein ligase TRIM33	View
3U5N	B	186	E3 ubiquitin-protein ligase TRIM33	View
3WU2	V	137	Cytochrome c-550	View
4CT0	B	96	Period circadian protein homolog 2	View
4I6J	C	130	S-phase kinase-associated protein 1	View
4IL6	V	137	Cytochrome c-550	View
4Y28	L	160	Putative uncharacterized protein	View
4YBM	A	177	Transcription intermediary factor 1-alpha	View
4YBM	B	170	Transcription intermediary factor 1-alpha	View
5B66	V	137	Cytochrome c-550	View
5L8R	L	157	Putative uncharacterized protein	View
5T44	B	116	Frizzled-7	View
5TIS	V	137	Cytochrome c-550	View
1CZJ	A	110	Cytochrome c3, 26 kDa	View
1E29	A	135	Cytochrome c-550	View
1F1C	A	129	Cytochrome c-550	View
1JYO	E	102	Secreted effector protein SptP	View
1K8K	E	174	Actin-related protein 2/3 complex subunit 3	View
1VYK	A	129	Oxygen-evolving enhancer protein 3, chloroplastic	View

Topology view of query protein [ProLego results]

1OS6 : A

Topology Information