Protein Detail

Protein Information

PDBId & Chain	1LDD : A
Molecule	Anaphase-promoting complex subunit 2
Residues	74
Sequence
SSE Sequence^*(6)	`HEHHEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ca.Hr.Cp.Ea-Hr.0.0.Cp-Hr.0.Cp-Cp.Ea-Cp`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1LDD_A

Protein Id: 1LDD_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1LDD_A

Protein Id: 1LDD_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HEE	Cp.Ea-Cp	False	4HR6:A,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
d1ldda_	--	74	u'Anaphase-promoting complex subunit 2'	View
1lddA00	--	74	Anaphase-promoting complex subunit 2	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3EYI	A	64	Z-DNA-binding protein 1	View
3EYI	B	67	Z-DNA-binding protein 1	View
3O2P	E	86	Cell division control protein 53	View
3RCO	A	76	Tudor domain-containing protein 7	View
3RCO	B	78	Tudor domain-containing protein 7	View
3TDU	C	75	Cullin-1	View
3TDU	D	76	Cullin-1	View
4KMF	A	62	Interferon-inducible and double-stranded-dependent eIF-2kinase	View
4OU0	A	65	Replication protein A 32 kDa subunit	View
1CF7	A	67	Transcription factor E2F4	View
1HST	A	74	Histone H5	View
2HEO	A	59	Z-DNA-binding protein 1	View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2ZME	D	97	Vacuolar protein-sorting-associated protein 25	View
3HTU	A	75	Vacuolar protein-sorting-associated protein 25	View
3HTU	C	75	Vacuolar protein-sorting-associated protein 25	View
3HTU	E	75	Vacuolar protein-sorting-associated protein 25	View
3HTU	G	75	Vacuolar protein-sorting-associated protein 25	View
4WCG	B	61	Putative uncharacterized protein	View
5N41	A	60	Uncharacterised protein	View
5SUZ	A	92	Segment polarity protein dishevelled homolog DVL-2	View
5SUZ	B	92	Segment polarity protein dishevelled homolog DVL-2	View
1DP7	P	76	MHC class II regulatory factor RFX1	View
1IF1	A	105	Interferon regulatory factor 1	View
1SFU	A	70	34L protein	View
1W1W	E	71	Sister chromatid cohesion protein 1	View
2VQC	A	68	Protein F-112	View

Topology view of query protein [ProLego results]

1LDD : A

Topology Information