Protein Detail

Protein Information

PDBId & Chain	1L8D : A
Molecule	DNA double-strand break repair Rad50 ATPase
Residues	103
Sequence
SSE Sequence^*(4)	`HEEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.Ea.Cp-0.0-Ha`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1L8D_A

Protein Id: 1L8D_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1L8D_A

Protein Id: 1L8D_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEH	Ea.Cp-0	False	5T59:C, 5T59:F, 5TDR:A, 2DS5:A,	d2ds5a_,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
1l8dA00	--	103	DNA double-strand break repair Rad50 ATPase	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
4PXV	C	48	Chitinase A	View
5BUM	B	49	Chitinase A	View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YNY	A	106	Putative inner membrane protein	View
2YNY	C	105	Putative inner membrane protein	View
2YNZ	A	109	Putative inner membrane protein	View
2YNZ	B	109	Putative inner membrane protein	View
2YNZ	C	109	Putative inner membrane protein	View
2ZDI	A	101	Prefoldin subunit beta	View
2ZDI	B	106	Prefoldin subunit beta	View
2ZQK	C	64	Translocated intimin receptor Tir	View
2ZQK	M	64	Translocated intimin receptor Tir	View
2ZQK	N	63	Translocated intimin receptor Tir	View
2ZQM	A	114	Prefoldin subunit beta	View
3AEI	A	94	Prefoldin beta subunit 2	View
3AEI	B	94	Prefoldin beta subunit 2	View
3C9I	A	233	Tail needle protein gp26	View
3C9I	B	242	Tail needle protein gp26	View
3C9I	C	233	Tail needle protein gp26	View
3C9I	D	221	Tail needle protein gp26	View
3C9I	E	226	Tail needle protein gp26	View
3C9I	F	221	Tail needle protein gp26	View
3FRY	A	73	Probable copper-exporting P-type ATPase A	View
3FRY	B	72	Probable copper-exporting P-type ATPase A	View
3MHS	C	93	SAGA-associated factor 11	View
3UK3	C	52	Zinc finger protein 217	View
3UK3	D	54	Zinc finger protein 217	View
3ZMF	C	111	Putative inner membrane protein	View
3ZQO	A	57	Terminase small subunit	View
3ZQO	B	55	Terminase small subunit	View
3ZQO	C	55	Terminase small subunit	View
3ZQO	D	57	Terminase small subunit	View
3ZQO	E	55	Terminase small subunit	View
3ZQO	F	55	Terminase small subunit	View
3ZQO	G	56	Terminase small subunit	View
3ZQO	H	56	Terminase small subunit	View
3ZQO	I	56	Terminase small subunit	View
3ZQO	J	57	Terminase small subunit	View
3ZQO	K	55	Terminase small subunit	View
3ZQO	L	55	Terminase small subunit	View
3ZQO	M	56	Terminase small subunit	View
3ZQO	N	55	Terminase small subunit	View
3ZQO	O	56	Terminase small subunit	View
3ZQO	P	57	Terminase small subunit	View
3ZQO	Q	57	Terminase small subunit	View
3ZQO	R	55	Terminase small subunit	View
4BMJ	F	58	Tax1-binding protein 1	View
4BMJ	G	59	Tax1-binding protein 1	View
4F52	B	84	E3 ubiquitin-protein ligase RBX1	View
4F52	D	85	E3 ubiquitin-protein ligase RBX1	View
4FAS	D	49	Uncharacterized protein	View
4FAS	E	49	Uncharacterized protein	View
4FAS	F	49	Uncharacterized protein	View
4IFD	K	81	Exosome complex exonuclease RRP6	View
4ISO	B	60	Kunitz-type protease inhibitor 1	View
4X8W	D	70	RE14437p	View
4X8W	E	72	RE14437p	View
5BU5	A	174	DNA stabilization protein	View
5BU5	B	174	DNA stabilization protein	View
5BU5	C	174	DNA stabilization protein	View
5BU5	D	174	DNA stabilization protein	View
5BU5	E	174	DNA stabilization protein	View
5BU5	F	174	DNA stabilization protein	View
5BU8	A	199	DNA stabilization protein	View
5BU8	B	178	DNA stabilization protein	View
5HDA	A	121	Zinc finger MYND domain-containing protein 11	View
5HDA	C	117	Zinc finger MYND domain-containing protein 11	View
5L8R	K	77	Photosystem I reaction center subunit X psaK	View
5MQ4	B	111	Protein kinase C-binding protein 1	View
5MQ4	C	117	Protein kinase C-binding protein 1	View
5MQ4	D	111	Protein kinase C-binding protein 1	View
5MQ4	E	111	Protein kinase C-binding protein 1	View
5MQ4	F	111	Protein kinase C-binding protein 1	View
1EGW	A	71	Myocyte-specific enhancer factor 2A	View
1P65	A	57	Nucleocapsid protein	View
1ZR0	B	59	Tissue factor pathway inhibitor 2	View
2I9F	A	58	Nucleoprotein	View
2WJV	D	54	Regulator of nonsense transcripts 2	View

Topology view of query protein [ProLego results]

1L8D : A

Topology Information